
CATMAID
@catmaid
A Collaborative Annotation Toolkit for Massive Amounts of Image Data
ID: 705401010328637441
http://www.catmaid.org 03-03-2016 14:34:41
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439 Followers
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And, a preview of what the whole fly brain EM dataset's user community has been up to while we rewrote, etc. ~5 mm traced cable length shown here! beautiful visualization by Uni Matrix, somewhat mangled by my downsizing & trimming to only 180° rotation #ASAPbio #bioRxiv

As Zhihao Zheng points out in response below, you absolutely can explore this awesome whole fly brain EM dataset from Davi Bock and crew online in CATMAID thanks to work of Virtual Fly Brain (shout out to Rob Court The University of Edinburgh) & image data hosted in Cambridge @MRC_LMB.

1 day left to register for #I2K Teaser: Neuronal circuit mapping & analysis with CATMAID -- circuit graphs, Venn diagrams of synaptic partners, 3D morphology visualizations, arbor synapse distrib., etc. This and more from my father, Albert Cardona @[email protected], at embl.de/training/eventā¦


Excited to share our bioRxiv: #connectomics reconstruction of olfactory circuits in the #Drosophila brain led by Alexander Bates @MRC_LMB, Uni Matrix Marta Costa Dept of Zoology. Collaboration with @ddavi, Scott Waddell, Gerry Rubin HHMI | Janelia 1/12 biorxiv.org/content/10.110ā¦


Congratulations on these new publications---an amazing collaborative effort! Including many nice reconstructions of neurons and their connectivity, created in the FAFB CATMAID instance (manual + segmentation). Soon to be shared through Virtual Fly Brain. #drosophila #connectomics



š It is out! Our joint effort to create a complete synaptic connectome of Drosophila larval brain came true and is published in Science Magazine: science.org/doi/10.1126/sc⦠Amazing work by Michael Winding, Ben Pedigo + colleagues from @MRC_LMB Cambridge University Johns Hopkins Engineering Johns Hopkins BME

Weāve generated a synapse-resolution map of an insect brain, includes 3016 neurons and half a million synaptic sites! Out today in Science science.org/doi/10.1126/sc⦠Summary below and in Ben Pedigoās thread. Zlatic Lab, Albert Cardona @[email protected], NeuroData Lab, Carey Priebe, and many others