Epiforecasts (@epiforecasts) 's Twitter Profile
Epiforecasts

@epiforecasts

A research group @lshtm working on the real-time modelling and forecasting of infectious disease dynamics.

ID: 1488149747680612354

linkhttps://epiforecasts.io/ calendar_today31-01-2022 13:59:12

23 Tweet

123 Followers

7 Following

Sebastian Funk (@sbfnk@fosstodon.org) (@sbfnk) 's Twitter Profile Photo

Registration now open (and free) The endemic-epidemic framework is a great way to model infectious diseases, combining statistical and epi approaches. And it's implemented in an R package. Find out all about it and applications to measles, covid etc in this hybrid workshop. 👇

Imperial PERC (@imperial_perc) 's Twitter Profile Photo

Can humans beat computer models at predicting the spread of COVID-19? As part of #BSW22 Nikos Bosse shares findings from the UK COVID-19 Crowd Forecasting Challenge, a #citizenscience project inviting the public to predict #COVID19 infections & deaths ➡️bit.ly/3i7tzhu

Can humans beat computer models at predicting the spread of COVID-19? 

As part of #BSW22 <a href="/nikosbosse/">Nikos Bosse</a> shares findings from the UK COVID-19 Crowd Forecasting Challenge, a #citizenscience project inviting the public to predict #COVID19 infections &amp; deaths ➡️bit.ly/3i7tzhu
Sebastian Funk (@sbfnk@fosstodon.org) (@sbfnk) 's Twitter Profile Photo

Less than two weeks left to apply for these posts. This is an exciting project and I’d strongly encourage anyone with experience in software engineering (esp. using #rstats) and interested in helping prepare for future epidemics and pandemics to apply. Here's why: 1/8

Sam Abbott (@seabbs@fosstodon.org) (@seabbs) 's Twitter Profile Photo

We started this with the aim to provide both decision-makers and the general public with real-time information on how the epidemic was progressing So was it useful? Hard to tell. epiforecasts.io/posts/2022-03-…

Richard Martin-Nielsen (@rmartinnielsen) 's Twitter Profile Photo

Thoughts here from Sam Abbott (@[email protected]) & Sebastian Funk (@[email protected]) (🧵) on Epiforecasts R(t) estimation dashboards. I really liked being a small cog in one widget of this larger machine - and recognise the work it takes to manage volunteers. I appreciate that effort - tx also to Kath Sherratt Joe Palmer

Epiforecasts (@epiforecasts) 's Twitter Profile Photo

We had a great presentation/discussion on time management systems in our last group meeting led by Hannah Choi In this thread, Hannah (in her first 🐦) summarises her thoughts on the bullet journal system and contrasts it with other approaches. A must-read!

Sebastian Funk (@sbfnk@fosstodon.org) (@sbfnk) 's Twitter Profile Photo

We’ve been investigating Ct values as a proxy for viral load of symptomatic (pillar 2) Covid-19 cases in England in the last 18 months. Work-in progress report (w/ Sam Abbott (@[email protected])) at epiforecasts.io/covid19_ct_pil… and a few observations in this thread. 1/9

We’ve been investigating Ct values as a proxy for viral load of symptomatic (pillar 2) Covid-19 cases in England in the last 18 months. Work-in progress report (w/ <a href="/seabbs/">Sam Abbott (@seabbs@fosstodon.org)</a>) at epiforecasts.io/covid19_ct_pil… and a few observations in this thread. 1/9
Epiforecasts (@epiforecasts) 's Twitter Profile Photo

Check out this #rstats package from lab member Nikos Bosse for evaluating forecasts. We have made lots of use of this in the group already so it's exciting to share.

Epiforecasts (@epiforecasts) 's Twitter Profile Photo

New analysis led by lab member akiraendo investigating the hypothesis that network effects might explain why this monkeypox outbreak looks so different from previous ones.

Sophie Meakin (@sophiemeakin) 's Twitter Profile Photo

In this week’s Epiforecasts group meeting, @grusonh got us chatting about contributing to #opensource projects on GitHub - why do it, how to contribute, and how we can encourage contributions to our own projects?👩🏻‍💻👨🏼‍💻 My takeaways ⤵️

Kath Sherratt (@kathsherratt) 's Twitter Profile Photo

Sophie Meakin Epiforecasts @grusonh Without getting into systematic reasons behind why, I think developers adding a clear path/encouragement for contributing that's explicitly neutral of dev or subject experience (confidence) can help.

Kath Sherratt (@kathsherratt) 's Twitter Profile Photo

📨New pre-print: Every week for over a year, we've collected and combined dozens of forecasts of COVID across Europe (Epiforecasts/ECDC). We've been taking a deeper look at how we've performed, and what we can learn from it medrxiv.org/content/10.110… /1

Sam Abbott (@seabbs@fosstodon.org) (@seabbs) 's Twitter Profile Photo

Interested in public health? Want to contribute to #rstats 📦 development? We are working on {epinowcast} 0.1.0 and have some issues for you. github.com/epiforecasts/e…

Interested in public health? Want to contribute to #rstats 📦 development? 

We are working on {epinowcast} 0.1.0 and have some issues for you. 

github.com/epiforecasts/e…
Sophie Meakin (@sophiemeakin) 's Twitter Profile Photo

🔍👀 Searching for users of the covid19.nhs.data R package!🎁 Have you used the mapping between local authorities and NHS Trusts that is included in the package? If yes, I would LOVE to hear what you used it for, and if you’re still using it! epiforecasts.io/covid19.nhs.da… 1/3

Sam Abbott (@seabbs@fosstodon.org) (@seabbs) 's Twitter Profile Photo

{epinowcast} 0.1.0 📦 now live on main. 🎉🥳🍾 In this release, we focus on the user experience and prepare the ground for extensions enabling a range of real-time IDE questions to be answered. PRs from: Adrian Lison, Sebastian Funk (@[email protected]), and Sam Abbott (@[email protected]) epiforecasts.io/epinowcast/new… 1/n

{epinowcast} 0.1.0 📦 now live on main. 🎉🥳🍾 

In this release, we focus on the user experience and prepare the ground for extensions enabling a range of real-time IDE questions to be answered. 

PRs from: Adrian Lison, <a href="/sbfnk/">Sebastian Funk (@sbfnk@fosstodon.org)</a>, and <a href="/seabbs/">Sam Abbott (@seabbs@fosstodon.org)</a> 

epiforecasts.io/epinowcast/new…

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Sebastian Funk (@sbfnk@fosstodon.org) (@sbfnk) 's Twitter Profile Photo

📢Three jobs available in the Epiforecasts group CMMID London School of Hygiene & Tropical Medicine, working on broad topics in real-time modelling for decision making in infectious disease outbreaks. jobs.lshtm.ac.uk/Vacancy.aspx?i… jobs.lshtm.ac.uk/Vacancy.aspx?i…

Sebastian Funk (@sbfnk@fosstodon.org) (@sbfnk) 's Twitter Profile Photo

And if R programming is your thing you should also consider this Research Software Engineer post jobs.lshtm.ac.uk/Vacancy.aspx?i… RStatsJobsBot @RStatsJobs