
GATK Dev Team
@gatk_dev
We are the computational biologists and software engineers who develop and support the Broad Institute's Genome Analysis Toolkit, or GATK.
ID: 618201967
http://www.broadinstitute.org/gatk 25-06-2012 15:46:07
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Mikhael Dito Manurung Ming "Tommy" Tang Yara Sanchez Corrales Gali Bai Matthew Young For those interested: New Terra Blog post on CellBender terra.bio/harness-machin…

Human geneticist know its been a nightmare to call reliable #CNVs from #exome. Fortunately Talkowski Lab helps calling CNVs on our Broad Institute-sequenced samples. Image our excitement with the new benchmarked algorithm #GATK-gCNV biorxiv.org/cgi/content/sh… #bioRxiv! Awesome!

Read Terra's blog on the collaboration to adapt Ultima Genomics data for GATK variant calling, which includes workspace preloaded with sample data and the fully configured analysis workflow: terra.bio/updated-gatk-p…



📣 New GATK release! 4.3.0.0 adds stable support for the Ultima Genomics flow-based sequencing platform among other feature improvements. Release notes here: github.com/broadinstitute…








Parabricks 4.0 is FREE for R&D, and the team made prebuilt workflows in #wdl and #nextflow available: developer.nvidia.com/blog/democrati… . They're on Terra (terra.bio/nvidias-clara-…), up to 24X faster, up to 2X cheaper, and publicly available on GitHub: github.com/clara-parabric…

Pretending to be a biologist this week - am learning so much in the Cambridge Bioinformatics Training / Broad Institute course on using the GATK Dev Team for variant discovery 🧬


Using a deep generative model, CellBender models and denoises droplet-based single-cell data and improves multiple downstream analyses. Broad Institute Patrick Ellinor GATK Dev Team nature.com/articles/s4159…

