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Helping my coworker w/ some gene co-expression analysis. Each row is a co-expression module (group of gene w/ similar expression pattern). Each column is a tissue. A tutorial to do this kind of analysis using tidyverse: github.com/cxli233/Simple… Paper: acsess.onlinelibrary.wiley.com/doi/full/10.10…

Python vs. R for Beginners: A guide by Harish Muhammad. Which one should you start with? Find out here: link.medium.com/mmX5oEQa8Lb #Python #RStats #DataScience #Programming

🚀 Meet Positron by Posit (RStudio)—a next-gen, polyglot data science IDE! Perfect for coding and data exploration. Dive in here: buff.ly/3xLCVv2 #Positron #RStudio #DataScience #IDE #RStats #DataAnalytics

Regular expressions essentials

rkabacoff.github.io/datavis/

Show which lines are repeated in a sorted file: uniq -d

Today, we're shipping a series of features that move uv beyond a pip alternative, and into an end-to-end solution for managing Python projects, command-line tools, single-file scripts, and even Python itself. A single, unified tool. Like Cargo, for Python. It's very fast.

academic.oup.com/bioinformatics…

biorxiv.org/content/10.110…

The chronospace R package is now published!! I hope it'll provide useful tools for visualizing and exploring sensitivity in estimates of divergence times. A really fun project with lifelong friend Millacarmonia besjournals.onlinelibrary.wiley.com/doi/10.1111/20…

Download HMM release 16.0 today! This release contains 17,078 HMMs, 406 of which are new since the last release. Learn more: ow.ly/Vp3H50T46VT

BGI Unveils New Nanopore Sequencing Platform. #Nanopore #Sequencer @BGI_Genomics GenomeWeb genomeweb.com/sequencing/bgi…

Docker commands essentials

New Article: "Chromosome-level scaffolding of haplotype-resolved assemblies using Hi-C data without reference genomes" rdcu.be/dR0zi With Research Briefing: "Achieving de novo scaffolding of chromosome-level haplotypes using Hi-C data" rdcu.be/dR0zn

Five ways #scientists are tackling #AMR 1: #NaturalProducts I.e., naturally produced antimicrobials from other microbes e.g., #Actinomyces🦠 (1/5) nature.com/articles/d4158…

Choosing Suitable Color Palettes for Accessible and Accurate Science Figures - Crameri - 2024 - Current Protocols - Wiley Online Library …rentprotocols.onlinelibrary.wiley.com/doi/10.1002/cp…

Linux file management essentials

Multiple Protein Structure Alignment at Scale with FoldMason biorxiv.org/content/10.110… github.com/steineggerlab/…

Linux disk management command

Excited to share our tools for LTR-retrotransposon annotation in plant genomes ! Supported by ELIXIR Czech Republic. doi.org/10.1093/nargab…