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Today I got to meet and chat with one of my heroes - Robert Haase! He exemplifies what open source software can and should do for bioimaging research and education. It is fitting that I met him at the CZI Science conference, given CZI is the leader in supporting such efforts 🙌

🆕 We have updated our preprint in bioRxiv 📰 It explains better the current state of #BiaPy ⛴️ while describing as well its limitations 🤗 Hope you like it! "BiaPy: Accessible deep learning on bioimages" biorxiv.org/content/10.110…

I'm presenting a poster at CZI Science Imaging The Future on the Three Gears of BioScience Projects. I will discuss how #imaging, analysis and modelling synergize and are fueled by clearly defined questions, and also how far should support go. 10.6084/m9.figshare.27725865

It was an amazing session! Great to have such a vibrant community for exchanging about challenges, opportunities and best practices 🔬🚀

And it is finally there! The heroic effort by @Lucrezia_CF paid off. It was not always easy but resilience and stamina got us there. Thanks also to our collaborators Carl D Modes and Robert Haase for support! Check it out and let us know what you think! biorxiv.org/content/10.110…

A little bit into the python API weeds but here is a 2 part video on how to deal with a tough multiscale segmentation problem with Cellpose: part 1 youtube.com/watch?v=hF9dT3… and part 2 youtube.com/watch?v=UIoXg5…

📅 REMINDER: Make sure to attend the inaugural lecture "From Pixels to Patterns: Machine Learning for Bioimage Analysis" of Prof. Martin Weigert at TU Dresden. It will be well worth it! ▶️ Tuesday, 26.11.2024, 4:40 p.m. ▶️ APB-E023, Nöthnitzer Str. 46, 01187 #Dresden

I am honored to receive the 2024 Early Career Einstein Foundation Award together with Helena Jambor is gone elsewhere. for our project "PixelQuality: Best Practices for Publishing Images": award.einsteinfoundation.de/award-winners-… Thank you to our amazing team QUAREP-LiMi and my hosts EU-OPENSCREEN ERIC and FMP Berlin

Kicking off the OME-NGFF #hackathon 2024 University of Zurich today! 🚀 With funding kindly provided by @NFDI4BIOIMAGE, we are bringing together experts on #OME #Zarr in Python, Java & image analysis workflows. Follow for updates on the future of a #FAIR bioimaging standard.

Haydee Hernández shares her thoughts on reproducibility in bioimage analysis following a working group session GloBIAS 2024. The post covers accountability and standards and how these could be implemented in the research ecosystem. focalplane.biologists.com/2024/11/20/bio…

Are you interested in #LLMs and #BioImageAnalysis? Have a look at the talk "Bio Image Analysis Code Generation" (using LLMs) given by ScaDS.AI researcher Robert Haase Robert Haase at the virtual #I2K2024 conference. The recording is now available. 👉 youtu.be/sBcV8rasOWo?si…

🚨🔬🤖📜 Paper is out! Introducing the #LiquidEngine and #NanoPyx - novel #AI strategies for accelerating #microscopy that explore how to maximise performance 🚀. Brainchild of Bruno Saraiva, Inês Cunha and Antonio Brito. Faster #SRRF and #eSRRF!! 📰: nature.com/articles/s4159…

⭕️Last week ScaDS.AI: Together with Universitätsbibliothek Leipzig, Robert Haase organized an online training on research data management with a focus on collaborative working & version control with git[hub] for 30 participants. Find materials here: 👉 zenodo.org/records/146260…

Last week, ScaDS.AI researcher Robert Haase and Ronny Gey from UFZ gave a workshop on “Artificial Intelligence in Everyday Research” and shared their knowledge about #LLMs, #PromptEngineering and #GoodScientificPractice. 👉To the training materials: doi.org/10.5281/zenodo…

Answering the call of Robert Haase, Christian Tischer,Pete Bankhead,Kota Miura,Beth Cimini Lab 🔬💻 📊 My Fiji training notes are now FAIR. All online in an open format to download and use for teaching, training and other things. All in Google Doc or PDF formats bit.ly/4hkfEBF

The people behind the project GloBIAS share a common vision: To bring together data scientists working in microscopy and share their knowledge. ScaDS.AI researcher Robert Haase and his colleagues talk about the goals and tasks of the association: 👉 youtube.com/watch?v=LPJEh9…

Organizer: - Josefine Umlauft (ScaDS.AI) - Jannes Münchmeyer (ISTerre) - Martijn van den Ende (Université Côte d'Azur) - Dr. Marius Isken (GFZ) - Robert Haase (ScaDS.AI) 👉Find out more: scads.ai/event/internat…

Build AI-powered code together with other researchers! 👩‍💻 Excited to announce that Robert Haase has developed Git-bob, a tool that allows researchers to collaborate on writing code with different AI systems. 👉Learn more about the tool: scads.ai/git-bob-ai-cod…

Train the Trainers in Bioimage Analysis 2025 - RMS DAIM - Crick Partnership 1-day workshop to establish and disseminate guidelines on how to organise courses and train researchers in bioimage analysis franciscrickinstitute.github.io/Train_the_trai… Deadline: 6th May 2025 The Crick RMS

20 years ago, we had to learn how to "google" - Today, we need to learn how to "prompt". From prompting to critical use - Join Robert Haase (ScaDS.AI Data Week Leipzig) for insights, tips & practical examples. Bring your laptop! 🕚June 12th - 11:00-12:30 🗣️In German #DataWeek2025