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(1) Finally out, after one of the most painful and long reviews (with nitpicky reviews, see my last comment) is a method that I am extremely proud of and excited about. One of the best in my career: nature.com/articles/s4159…

Exciting and interesting outlook on new tech for 2022 nature - eg. on structure (and cryo-ET), long-read sequencing but also spatial multi-omics. nature.com/articles/d4158…

Interested in spatial omics? Plz check out our squidpy tool, bringing together omics & image analysis to enable a scalable description of spatial molecular data. Out today Nature Methods thx to Giovanni Palla, Hannah Spitzer & team! nature.com/articles/s4159… github.com/theislab/squid…

Really pleased to see this amazing work come out. So well deserved. Congrats Xiaojie!

Temporal modelling using single-cell transcriptomics dlvr.it/SJNpd4

To spatial transcriptomics fans, the detailed protocol of our Giotto package is out in Current Protocols. doi.org/10.1002/cpz1.4…

We are very excited to announce scverse (scverse.org), a new consortium around the core Python packages for single-cell omics data analysis. scverse is a cross-lab effort to ensure the longevity and interoperability of the single-cell analysis ecosystem in Python.

We're looking for new talent and team-players to join our lab! We have multiple positions open, including for a new lab manager, junior bioinformatician and postdoc! All on the crossroads of #spatialOmics #Oncology #technology See drieslab.com/Join%20Us/ for info. Feel free to RT

Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data | Nature Communications nature.com/articles/s4146…

Nice overview of emerging spatial genomics, transcriptomics and proteomics technologies and key applications from Jeffrey Moffitt ⁦Emma Lundberg⁩ ⁦Holger Heyn⁩ ⁦Nature Reviews Genetics⁩ nature.com/articles/s4157…

Our lab is recruiting postdocs on spatial transcriptomics and single-cell multi-omics. Please help spread the word! linkedin.com/hiring/jobs/24…

SIMBA learns a co-embedding space of single cells and multiple features such as genes, chromatin accessible regions, and transcription factor binding sequences, boosting performance of various analyses of cellular diversity and regulation. nature.com/articles/s4159…

1/6 A little thread to celebrate this milestone! Our SIMBA manuscript has finally seen the light of day, after a journey of more than 2 years. It's been an intense ride, but we're thrilled with the result.

Excited to be writing & publishing a Nature Portfolio "Behind the Paper" blog post for SIMBA! healthcommunity.nature.com/posts/building… Hope this helps to convey high-level ideas to more readers.