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We are delighted that Mathias Mann - Director at Max Planck Institute of Biochemistry & at Novo Nordisk Foundation Center for Protein Research - visited us. After his lecture we showed him our ongoing projects and discussed possible future collaborations. A busy but fruitful day.

With Prof. Marko-Varga and his team from Lund University we visited the Dept of Pathology at University of Szeged, the Eli Alps, the Szeged Biobank and the Single Cell Center at HUN-REN Biological Research Centre, Szeged. The Melanoma Megastudy project aims to analyse melanoma tissues to fight the disease.

Some of our colleagues participated in a roundtrip in Germany, visiting collaborators at EMBL and the Heidelberg University Hospital. It was nice to share scientific achievements and meet everybody in person. Thank you for the invitation and the good company.

🎙️ Excited to have Prof. Peter Horvath , Director at the HUN-REN Biological Research Centre, Szeged, as our keynote speaker on Day 3 of Center for Advanced Systems Understanding at HZDR #COVID19 #workshop . He's a renowned computational cell biologist with expertise in #ML. Don't miss his talk and register now: ➡️ events.hifis.net/event/564/

Life beyond the Pixels was a fantastic talk given by computational biologist Peter Horvath Peter Horvath BRC Biochem for the IPW seminar series hosted by Yohei Y. #AI #singlecell #MolecularMedicineLab D-CHAB Thanks Peter for your visit to ETH!!

Our HCLA landmark paper is out today!

Tumor spheroids are invaluable tools in cancer research and in understanding tumor biology. The miniature, 3D replicas faithfully mimic the complex structures and behavior of real tumors. We continuously improve BIAS to enhance the automatic evaluation of 3D spheroids.

This is my son's Geri first channel and video. With his own handdrawings. Enjoy! youtube.com/watch?v=gQqLmP…

Yes, our Nature Methods article is just out about misinterpretation of image segmentation metrics. Very proud. Dominik Hirling Juan C. Caicedo BRC Biochem Nature Methods nature.com/articles/s4159…

"Despite clear definitions existing for the AP and mAP metrics, many alternative interpretations have emerged recently." If this has ever confused you (like it did me), please have a read through this paper on metrics for biomage analysis.

Napari nD annotator is coming soon with several helper functions. napari🔬 #DeepLearning #segmentation BIOMAG #annotation

Today we celebrate our 50th anniversary! We are pleased that Katalin Kariko will give a talk at our anniversary event.

Out today! Nature highlighted the importance of single-cell segmentation. We are especially proud of our cover image of 3D cells. Single-Cell Technologies #singlecell #segmentation #deeplearning #AI nature.com/articles/d4158…

Our new napari🔬 annotation tool is out today on Biorxiv. We hope it will help the community. Please spread the word and RT. BIOMAG #deeplearning Réka Hollandi biorxiv.org/content/10.110…

We have published our work on analysis of Cell Painting with weakly-supervised learning, a lot of interesting stuff came along the way, I am very thankful to Juan C. Caicedo Anne Carpenter, PhD Shantanu Singh Beth Cimini 🔬💻 📊 Peter Horvath and all the contributors nature.com/articles/s4146…

Hahh, those moments. I am happy.

I am hiring a postdoc to my Munich Helmholtz lab. Please RT! Postdoc in deep-learning driven single-cell transition analysis for digital pathology (f/m/x) | Helmholtz Zentrum München shorturl.at/eirAI

Check out our new preprint about the first 3D plate that enables high-content screening of multicellular 3D biological models (oids) at a single cell resolution using AI and light sheet microscopy. #AI #deeplearning #3d #hcs #spheroid biorxiv.org/content/10.110…

Excited to share that Spapros, the first end-to-end probe set selection method for targeted spatial transcriptomics, is now out in nature methods doi.org/10.1038/s41592… , a collab of the labs of Malte Luecken, Marie Piraud, Peter Horvath, Ali Max Erturk, C. Samakovlis, Fabian Theis 🧵1/17

Bridging Pathology and Molecular Science with Deep Visual Multi-Omics Combined AI-based tissue diagnostics with single cell isolation and deep multi-omics profiling to unravel the link between morphology and molecular changes in kidney cancer (ccRCC). biorxiv.org/content/10.110…