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Congrats Tushar Kamath, Vahid Gazestani and dear collaborators Ville Leinonen and @LabMalm. Amazingly, Vahid integrated our data with most postmortem datasets: braincelldata.org/resource We hope his work provides a common language for discussing cell types and states in human cortex.

How can google bard be so so awfully bad and wrong.

All postdocs in my lab are paid in the range of 85-95K. One of the reasons I can't go beyond is (reverse) equity concerns from HR. I would ideally pay them 105-115K. I think that's how much I could afford based on funding I can pull in & reducing lab size to a functional minimum.

Super excited to present our algorithm, Mellon for computing densities in single-cell landscapes. biorxiv.org/content/10.110…

When people tell me, it’s the paper that maters, not the journal, I wish that were true for me!Unfortunately, a lot of scientists (and many whose work I admire) are influenced by status. I work at a not particularly high-status university and

Wholeheartedly agree.

🎉 Exciting News! 🎉 I am thrilled to announce that I am starting my lab this fall under the gene expression and regulation program of the Wistar Institute (The Wistar Institute) in Philadelphia! 🧬🔬 #SrivastavaLab #Research #Academia 1/8 avisrilab.org

ChatGPT API to ChatGPT_PI

We can't expect the bioinformatics community to be transparent if this statement is deemed "okay" by editors.

Matt Damon makes a better case for academic tenure than I’ve ever heard x.com/docnoir_/statu…

simpleaf is ✨amazing✨! - haven't properly tested it but it feels ~50x faster than CellRanger - you get spliced/unspliced/ambiguous split out for free - Rob (𝕐) have been super nice and responsive to all our questions and occasional bug reports 😊

We're looking for postdoctoral fellows in AI! We offer: excellent cohort of young researchers, dedicated GPU cluster with 300H100s, $100K salary (+$10k research funds), stunning campus. 1 hour from NYC and Philly. Renewable, i.e., possible to stay multiple years. Join us!

conda update --all 🫠

Yifei was an amazing scientist and a kind soul. During our brief time together, he passionately taught me a lot about genomic research and machine learning. Please consider donating for his daughter's education.

We are looking for an intern with a strong ML and interpretability background to join me, Julius Adebayo, and the amazing Prescient Design Genentech team next summer as an intern in our NYC office! We will be adding interpretability to LLMs with applications in drug discovery. 🧵1/

Slide-tags unifies the single cell + spatial genomics worlds. It solves three key problems with existing spatial methods: 1) Cell segmentation (the biggest problem) 2) robustness and scalability (well-powered case-control studies now possible) 3) Multiomics (ATAC, RNA, etc)

Supercharge your summer by joining our team at Genentech as an intern! I'll be mentoring one intern focusing on representation learning for omics data. Sounds interesting? Read more and apply here 👉 roche.wd3.myworkdayjobs.com/ROG-A2O-GENE/j…

Alma is an amazing researcher, I bet it would be an amazing summer for any upcoming bioinformatics researcher who gets this opportunity.

We've updated our #bioRxiv preprint investigating the potential impact of #geneexpression normalization methods with different gene panels in analysis + interpretation of #singlecell imaging-based targeted #spatialtranscriptomics data. Check it out: biorxiv.org/content/10.110… 🧵1/n

Is there a way to stitch fov-s from multiple anndata objects (or within one anndata object) in scanpy/squidpy/scverse world, like one would do in Giotto ? #spatial #scverse