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Watch Tazro Ohta (Tazro Inutano Ohta) talk about sharing reusable computational workflows with his new Yevis platform in our youtube channel youtu.be/Yr7UUw_lqGE

heistak.github.io/your-code-disp…

A workflow reproducibility scale for automatic validation of biological interpretation results Tazro Inutano Ohta et al propose a new metric, a reproducibility scale of workflow execution results, to evaluate the reproducibility of computational results. doi.org/10.1093/gigasc…

This workflow utilises their recently published Yevis workflow registry, and Tazro Inutano Ohta talks more about this in a recent video youtu.be/Yr7UUw_lqGE

Anyone working on IDs of public databases? Let me share one of my favorite apps developed by DBCLS, giving me a very smooth ID conversion experience while I'm working on a public dataset work #BioHackJP togoid.dbcls.jp

see you #biohackjp

Thanks to everybody who made #biohackjp so exceptional and to BioHackathon toshiaki katayama for the invitation. Hopefully we meet again this autumn for #BioHackEU23

At #biohackJP, we took Oxigraph for a spin with a subset of PDBj_en #RDF nearing half a billion triples. We successfully hosted multiple endpoints on a standard MacBook Pro, reverse-proxied with Caddy Web Server. Our test environment surpassed the performance of a traditional

GigaScience author presenting at #ISMBECCB Tazro Inutano Ohta

BioThings API toolsets for building & integrating biomedical knowledge #API at #bosc2023 #ISMBECCB2023. Visit our posters today and/or join two talks on BioThings SDK and BioThings Explorer (by Jackson Callaghan) tomorrow, day-2 of #bosc2023

Was great to see Tazro Inutano Ohta presenting in #BOSC2023 on Tonkaz, his recent paper in GigaScience presenting a workflow reproducibility scale for automatic validation of biological interpretation results doi.org/10.1093/gigasc… #ISMBECCB2023

#ChIPAtlas Happy to announce a major update of ChIP-Atlas that now allows you to browse not only the epigenomics data but also a wide range of genomic annotations such as Hi-C, ChromHMM, GWAS SNPs and eQTLs data. chip-atlas.org

In addition, a new tool, Diff Analysis, has been released that allows the retrieval of differentially methylated regions (DMRs) from two given sets of WGBS data. Thanks to Tazro Inutano Ohta and ZOU, Zhaonan (鄒 兆南) for their great contributions!

Next is Nanopore analysis with Galaxy by Ⓝ

Finished all talks and enjoying further networking! Thank you for all authors helping this event ☺️

I've been away from contributing to the Galaxy project, but so happy to have had a chance to introduce the NanoGalaxy to the Japanese Nanopore community! Over a decade passed, but I'm sure of that the Galaxy and its community are still invaluable for all researchers in biology!

Good morning Japan! Mount Fuji looking amazing with fresh snow. I have a week talking to Japanese colleagues ⁦Bioinformation and DDBJ Center DNA and metabolomics data sharing for the benefit of the world!

#ChIPAtlas Our paper about a major update of ChIP-Atlas is out! ChIP-Atlas 3.0 provides not only ChIP-seq, ATAC-seq and Bisulfite-seq data, but also Hi-C, ChromHMM, GWAS SNPs and eQTLs data. Great contribution from ZOU, Zhaonan (鄒 兆南) and Tazro Inutano Ohta ! academic.oup.com/nar/article/do…