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Danielle Beckman @dava_keavney Natalia Quinones-Olvera Like, come tf on BioRender biorender.com/academic-licen…

Check out our new collection method for SCFA Arome Science Inc.. S-Wipe: stool sample collection for metabolomic gut health tracking biorxiv.org/content/10.110…

What's more convincing? p = 0.04 in a sample of 10 or p = 0.04 in a sample of 1,000,000? 🧵

What a hoot. Bayesian reasoning to explain frequentist paradoxes 👀

Alright everyone, it's happening BiomeSense is looking for another bioinformatician. Want to come work with an amazing team of scientists and engineers? Message me: yoshiki AT biomesense.com

This is a unique opportunity to work on real-time sequencing analysis with their incoming smart toilet.

KANs deserve careful investigation — since they have the potential to outperform standard NNs in accuracy, model size and interpretability. arxiv.org/pdf/2404.19756

Thrilled to announce AlphaFold 3 which can predict the structures and interactions of nearly all of life’s molecules with state-of-the-art accuracy including proteins, DNA and RNA. Biology is a complex dynamical system so modeling interactions is crucial blog.google/technology/ai/…

OPEN CALLS #postdoc Are you comfortable with analysis of large-scale #microbiome data? Do a #postdoc with us as part of the CoDiet project with focus on non-communicable diseases. For any Q feel free to contact Nicola Segata Deadline: June 17, 2024 lavoraconnoi.unitn.it/assegni-di-ric…

Thrilled to have organized an amazing scikit-bio tutorial at #ISMB2024! Thanks to Jamie Morton, Matt, @valentynbez, @hsecairam, and all who attended and engaged! Tutorial materials are available at: twtr.to/eErkG. Let's push the boundaries of #OpenScience together!

Feel free to check out our protein language models tutorials and learn how to annotate protein functions where protein structure prediction struggles

We uploaded a v2 of our book draft "The Elements of Differentiable Programming" with many improvements (~70 pages of new content) and a new chapter on differentiable data structures (lists and dictionaries). arxiv.org/abs/2403.14606

Preprint on "BWT construction and search at the terabase scale". We can compress 100 human genomes to 11GB in 21 hours, find SMEMs with it, do affine-gap alignment and retrieve similar local haplotypes. 7.3Tb commonly sequenced bacterial genomes ⇒ 30GB arxiv.org/abs/2409.00613

deepFRI yet again helps us to illuminate how biology works. This time, we studied 5 new bacterial species that emerged at the International Space Station and showed their functional adaptations to space conditions.

BREAKING NEWS The Royal Swedish Academy of Sciences has decided to award the 2024 #NobelPrize in Chemistry with one half to David Baker “for computational protein design” and the other half jointly to Demis Hassabis and John M. Jumper “for protein structure prediction.”

Looking to recruit a lab research coordinator employment.ucsd.edu/research-coord…

The #bileacid mania continues! Our lab was lucky to help with this fantastic paper by Frank Schroeder and David Artis et al. published in nature. Describes another group of bile acids with significant impacts on human physiology. Yousi Fu Doug Guzior rdcu.be/d5DBN

Lab-in-the-loop therapeutic antibody design At Prescient Design Genentech we have spent 3+ years reimagining drug discovery. We built a machine learning system to design and execute experiments. Here's how it works and what we can do 🧵 1/