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PanGenie, Jana Ebler's awesome method to leverage haplotype-resolved assemblies (= a pangenome representation) for rapidly genotyping short read data sets. Huge gains in terms of genotypable insertion SVs. Stay tuned for updates (eQTLs, GWAS, etc).

Please RT: Still accepting applications for PhD position on algorithmic pangenomics (alpaca-itn.eu/job-offer-hein…), with a focus on complex loci. Part of Alpaca network (alpaca-itn.eu) with great PIs: Rayan Chikhi Zamin Iqbal Richard Durbin @jensstoye Veli Mäkinen et al.

Ein neuer Artikel auf fc08homburg.de: U23: Joel Ebler verlängert beim FCH ift.tt/3slPIMn #fc08homburg #fch

🧬A breakthrough in human #genome research: "Human Genome Structural Variation Consortium" (HGSVC) For several decades, research has been conducted to decode the human genome.

Human SV resource based on 64 haplotype-resolved assemblies from 25 populations by Human Genome Structural Variation Consortium. Privilege to work with this truly amazing team! science.sciencemag.org/content/early/…

If you have trouble visualizing and/or debugging big GFA files, this small tool I made might help. It separates a subgraph with a user-defined size around one or more node(s) github.com/fawaz-dabbaghi…

German players of first and second women's leagues calling on their federation to step up against discrimination. Coaching women is not a punishment. Calling it such is discrimination. We stand fully behind you! Alex Popp @FIFPro

BubbleGun: Enumerating Bubbles and Superbubbles in Genome Graphs biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

The preprint about my tool BubbleGun for detecting bubbles in genome graph on Bioarxiv biorxiv.org/content/10.110… on Github github.com/fawaz-dabbaghi… Tobias Marschall Jana Ebler #bioinformatics #pangenome #bubbles #genomegraphs

Excited to announce that we are hosting this year's edition of Data Structures in Bioinformatics (DSB) at Düsseldorf. Meeting: June 13+14, Abstract deadline: May 22, see dsb-meeting.github.io/DSB2022/ co-organized with: @guwekl Fawaz Dabbaghie @dany2k

The Heinrich-Heine-Universität Düsseldorf Medical Faculty is looking for a Bioinformatics staff scientist for the new Core Unit Bioinformatics - apply here: linkedin.com/jobs/view/3218…

Was ist ein Referenzgenom, wofür braucht man es und was hat das mit Diversität zu tun? Heute sprechen wir mit Tobias Marschall und Jana Ebler über einen wichtigen Grundbaustein der Genomforschung. ghga.de/de/codedeslebe… 🎧

Researchers from the National Human Genome Research Institute-funded Human Pangenome Reference Consortium (Human Pangenome Reference Consortium) have completed a collection of new human reference genome sequences that much more accurately reflect global diversity! genome.gov/pangenome

The first draft of a human pangenome reference — a collection that aims to eventually represent as many as possible of the DNA sequences found across our species — is published in Nature today go.nature.com/41tVqg6

Am 10. Mai wurde übrigens der erste Entwurf eines humanen Pangenoms veröffentlicht! Herzlichen Glückwunsch, das ist ein Meilenstein für die Genomforschung! Wie das Pangenom zusammengesetzt wurde kann man hier nachlesen 👇 nature.com/articles/s4158…

I am very grateful for the opportunity to take part in the 72nd Lindau Nobel Laureate Meeting Lindau Nobel Laureate Meetings . Thank you Heinrich-Heine-Universität Düsseldorf for nominating me! #LINO23

🎓 Examensfeiern, Absolventenfeiern und Promotionsfeiern – im Juli wird bei uns viel gefeiert! Unsere Fotos zeigen die traditionelle Prämierung der kreativsten Doktorhüte der Math.-Nat.-Fakultät und die zugehörige Promotionsfeier. Geehrt wurden hier 67 Promovierte. 1/3

Next, Jana Ebler (Jana Ebler) talks about short read pangenome SV genotyping, Pangenie