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Let's talk about #phage and #ML! Come by on Monday 6pm and chat with Melania Nowicka, presenting her & Jakub Bartoszewicz's poster A-348: Interpretable prediction of phage life cycle from unannotated DNA sequences! 🦠🧬 #ISMBECCB2023

We propose a modified explanation method to create sparser relevance attribution for predictions of convolutional neural networks on genome sequences. Check out Paulo Yanez's poster on Tuesday: B-237 #xai #CNN #genomics #ISMBECCB2023 #MLCB

Are you still using Kraken or Centrifuge for long-read taxonomic classification? Or are you using large Bloom Filters for biological data analysis? If the answer is yes, you should attend the talk from Jens-Uwe Ulrich at 2:10 p.m. in the Lumière Auditorium #ISMBECCB2023 #HiTSeq23

🌳🧬Jens is presenting Taxor, a new long-read taxonomic classification and profiling tool at #ISMBECCB2023 in Lyon HiTSeq 2024! Join us now in the Lumière Auditorium! #HiTSeq23

Join Bernhard Renard’s talk today at 13:20 summarizing our group’s recent works on “Learning and Understanding Spectra” at the #CompMS track at #ISMBECCB2023 in room Rhone 3a!

Bernhard is starting the session with his invited talk on learning and understanding spectra at #CompMS #ISMBECCB2023! Join us in Rhone 3 right now!

Big thanks to the #NCBICGR team for highlighting the work of Jakub Bartoszewicz, Ferdous, and Melania Nowicka on detecting DNA of novel fungal pathogens using ResNets & a curated fungi-hosts data collection (pubmed.ncbi.nlm.nih.gov/36124807/). #NCBI #Fungi #ResNets #Pathogens #Bioinformatics

Can prompt-tuning become a low-cost alternative to fine-tuning of protein LMs for sequence generation? NLP metrics are not enough - biological eval is a must! Check out our paper at #MLCB2023, by Andrea&Kevin, advised by Melania Nowicka & me at Renard Lab biorxiv.org/content/10.110…

Our latest preprint on ML for influenza vaccine selection is out! We utilized historical antigenic analysis data from the World Health Organization (WHO) to demonstrate that our model selects vaccine strains that reliably improve over the annual recommendations. (1/4)

My new lab at the Institute of AI for Health at Helmholtz Munich | @HelmholtzMunich is looking for postdocs! Great projects in AI for discovery of antimicrobial peptides and Computational oncology. RT or apply! jobs.helmholtz-muenchen.de/jobposting/2b4…

Late, happy news! Melania Nowicka and I started our postdoc adventure MIT CSAIL, with Regina Barzilay & Renard Lab. Thx to the Designing for Sustainability Program of MIT Morningside Academy for Design & Hasso-Plattner-Institut, we explore the use of AI to design therapeutic agents to combat antibiotic resistance!

To future PhD students! My lab offers two super exciting positions to work on AI-driven antimicrobial peptide discovery. Please share and apply. Can't wait to work on this topic with you☺️! Both positions are funded by European Research Council (ERC). Check the ad here: jobs.helmholtz-muenchen.de/jobposting/82b…

The deadline for our AI & Health Summer High School Bootcamp is at the end of April! If you know a bright, curious high schooler excited about AI, tell them to join us Massachusetts Institute of Technology (MIT) to learn directly from world-class researchers about the power of AI in health 🌎 loom.ly/dvYCpos

We are looking for a PhD student in an ERC-funded project in my Warsaw lab. Generative AI saving the world from dangerous bacteria :). If you love computer science, math and want to do something good, apply or at least share! euraxess.ec.europa.eu/jobs/232815

Two 🔥 computational postdoc positions 🔥are available in our lab, funded by European Research Council (ERC) ! embl.org/jobs/position/… and embl.org/jobs/position/…. Join us and unleash the power of these just-delivered beasts 👇And please repost to help us!

#MLCB2024 kicks off in 22h (9am PST) with keynote from Jian Zhou on DL for transcriptional initiation! Full schedule at mlcb.github.io and public livestream at youtube.com/live/reqWvNOKl…. Please RT!