Let me introduce: InstanSeg 🦠🔬💻👩‍🔬 This *would* have been a short thread about Thibaut Goldsborough’s PhD work… but he solved too many problems. Now it's a long thread about 2 preprints, a whole new approach to cell segmentation & #opensource software to make it easy to use

Everyday is spline day, and today even more! We are releasing #SplineBox, a Python package for spline fitting 🐍 Fantastic collab with the EPFL Center for Imaging Center building on my EMBL-EBI work. Check it out, feedback welcome (love letters or angry e-mails): splinebox.readthedocs.io

2 interesting bioimage analyst & IT specialist positions in Bern available! + you'd get to work with Guillaume Witz , which is certainly a great benefit!

Super stoked that Jordão Bragantini 's napari🔬 plugin for Meta's Segment Anything Model 2: napari-sam2, as well as our cell tracking software ultrack were showcased during Chris Cox's Keynote at Meta's Connect 2024. Jordao and I were in the audience; it was great fun!

our work on vitessce is out in Nature Methods!

15 million people trusted 23&me with their DNA. Now the company is almost bankrupt, the stock about to be delisted, and almost the entire board has resigned. Who will they decide to sell your info to? 1/

Would you like to work on service-oriented bioimage analysis projects with fun colleagues at EMBL? embl.org/about/info/dat… Please check out the below call. Webinar is TODAY!

We are opening two positions at the Bioimage informatics unit – BIIF! BIIF is a unit of SciLifeLab , and also part of the National Bioinformatics Infrastructure Sweden (NBIS) . What can you do while working with BIIF?

still learning how to explore these large microsopy datasets. new trick: letting claude write small interactive UIs, customized to our data. happy to hear your tips!!

I2K (i2kconference.org) group picture time!!! Look at this AMAZING crowd!!! 🤩 Human Technopole #I2K2024

If you didn't yet have enough good reasons to share your bioimage data, Matthew (BioImage Archive), Josh (Josh Moore), Erin (@tuesdaystitches), Assaf (Assaf Zaritsky) and I are here with squirrel drawings to convince you that you should do it: journals.biologists.com/jcs/article/13…

It's great to be at #I2K2024 #i2k and see (almost) everyone in bioimage analysis. If you're interested in OME-Zarrs or what we're doing with Fractal, stop by my poster today! :)

Xarray v2024.10.0 has just been released, including support for xarray.DataTree and zarr-python v3 !!! github.com/pydata/xarray/… Xarray zarr_dev

OME-Zarr: "Even a talk on formats [can be] interesting" Josh Moore Pavel Tomancak #I2K2024 #BioImageAnalysis

Thanks to all the speakers, instructors and participants of the 2024 edition of #I2K2024! Follow us on social media and monitor our website to stay updated on the next course 👉 humantechnopole.it/en/external-tr…

📢 PhD & Post-Docs! Don't miss the Microscopy Winter School 2025, Jan 20-24! Boost your skills with hands-on training: 🔬 Advanced Light #Microscopy #SuperResolution #CLEM 🔬Volume Scanning EM & more! 📍 Univ. of Zurich & ETH 🗓️ Register by Nov 17: zmb.uzh.ch/en/Teaching/Wi…

Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis forum.image.sc/t/2024-image-a…