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RiboSnake – a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis. #16S #Bioinformatics #Snakemake #Pipeline #GIGAbyte gigabytejournal.com/articles/132

I’m very happy that this is happening and to have a hand in helping support the event via our NSF-Funded FAIROS-HEP project. datascience@uw UW-Madison Physics

So far, I thought that there is no reasonable way to observe a read alignment CIGAR with a leading deletion. We have recently seen this though. Is that reasonable? How could the aligner know without matching bases in the read before the deleted ones? (BAM comes from giraffe)

We already have many fantastic registrations for the Snakemake hackathon 2025 at CERN! But there are still some free seats left. Make sure to apply/register soon if you want to shape the future of Snakemake! indico.cern.ch/event/snakemak…

Our latest study developing a Snakemake framework for the assembly and phylogenetic analysis of mitochondrial and ribosomal sequences from genome skims of museum collections is now published in Molecular Ecology with Science at the Natural History Museum onlinelibrary.wiley.com/doi/full/10.11…

There were several new #Snakemake releases in the last weeks. Most importantly, the scheduler performance has been improved and there is a new CLI option to mark certain files as "ancient" at runtime (overriding mtime based rerun triggers). snakemake.github.io

There is a new #Snakemake tutorial that complements the general tutorial by specifically introducing how to use #Snakemake for plotting and interactive reporting, including how to combine #Snakemake with #Datavzrd: snakemake.readthedocs.io/en/stable/tuto…

#Datavzrd, our tool for rapid and server-free visualization of tabular data now supports spells, which enable to share and collaborate on column visualizations and thereby extend Datavzrd further: datavzrd.github.io/docs/spells.ht…

Not fully leaving yet, but will be switching where I mainly post.