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Very happy to see the peer-reviewed version of this work out at …eneticsandchromatin.biomedcentral.com/articles/10.11… We performed expression-methylation quantitative trait loci in 19 cancer types and identified 13 TFs likely driving DNA methylation patterns around their TFBS in at least 2 cancer types 1/6

Happy to publish our latest work as a preprint in bioRxiv. DNA methylation can predict and explain response to chemotherapy and bevacizumab. biorxiv.org/content/10.110…

Haha! Never underestimate a feeling, I guess. Good luck with the replies 😟

Looking forward to great science and epigenetics the next few days in Oslo ☀️ I am presenting a talk and poster about dynamics of lamina-associated domains during adipogenic induction. #OsloEpigenetics2022 @collas_lab

Great to see the peer-reviewed version of this work now out. Thanks Jonas Paulsen Roberto Rossini for having us involved! And congrats again 👏 genomebiology.biomedcentral.com/articles/10.11…

New publication: "MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions" with Roberto Rossini and Jonas Paulsen Department of Biosciences, University of Oslo. Jonas Paulsen Roberto Rossini Genome Biology genomebiology.biomedcentral.com/articles/10.11…

MoDLE, modeling of DNA loop extrusion, from Roberto Rossini, Jonas Paulsen, simulates DNA contact maps quickly, using low memory. It requires a genome region and the barrier positions in the region eg CTCF binding sites. Predicts effects of deletoins on TADS genomebiology.biomedcentral.com/articles/10.11…

We're excited to share our manuscript describing COBIND, a novel tool for the identification of transcription factor co-binding patterns with non-negative matrix factorization biorxiv.org/content/10.110… 1/9

Truly amazing to see the ELIXIR Europe crowd gathered for the All Hands Meeting in Dublin taking bioinformatics to new heights!

Associate professor of Medicine (Biochemistry) position open at Institute of Basic Medical Sciences, University of Oslo! We are recruiting a new colleague working within the fields of chromatin biology or membrane dynamics! UiO - Det medisinske fakultet Women in Autophagy jobbnorge.no/en/available-j…

Congratulations to Eivind Hovig! And thanks for great collaboration through more than two decades! You have made invaluable contributions to FUGE, ELIXIR Norway and Norwegian bioinformatics and cancer research!

Last couple of days to apply for this postdoc position to generate deep learning models and expand the great JASPAR and UniBind databases @NCMMnews! It's a fantastic project in a very supportive group with outstanding collaborators!

We are hiring an #engineer in the field of #molecular_biology to work with #single_cell_RNA_sequencing and #spatial_transcriptomics in the context of #breast_cancer research. Apply here: finn.no/job/fulltime/a…

Thanks to Vessela Kristensen, here is a great picture from @NCMMnews scientific retreat with Emma Haapaniemi presenting her group's research! #WomenDoScience #InclusionMatters

Our lab (papantonislab.eu) is still looking for a PhD candidate with a strong computational biology background and a keen interest for genome assembly and #3Dgenomics to join our subproject in the exciting EvoREST initiative on genome evolution. Universitätsmedizin Göttingen (UMG) Uni Göttingen

🎉 Excited to share the peer-reviewed version of our manuscript describing COBIND, a tool for revealing TF co-binding patterns using non-negative matrix factorization. Great work led by Ieva Rauluševičiūtė @NCMMnews Nordic EMBL P'ship UiO - Det medisinske fakultet Universitetet i Oslo academic.oup.com/nar/advance-ar… Nucleic Acids Res

Epigenetics, gene transcription and cancer research X afficionados...Don't forget to register and join our exciting "nuclear topology and 3D chromatin architecture in cancer" online symposium taking place on Monday November 11th! Organized by Jane Skok and Melnick Lab

Finally biologists can also use numpy (array programming). Handling e.g. DNA and protein sequences with convenience and speed, like physicists and machine learners for decades have worked with numerical data: nature.com/articles/s4159… (1/3)

🚨 PhD in Bioinformatics & Gene Regulation 🚨 Join the Bioinformatics in Life Science initiative through a multidisciplinary project to unravel gene regulation from DNA to proteins, co-supervised by Eivind Valen Jonas Paulsen and me Department of Biosciences, University of Oslo @NCMMnews! jobbnorge.no/en/available-j…