Karissa Whiting (@karissawhiting) 's Twitter Profile
Karissa Whiting

@karissawhiting

Data, biostats, #rstats, cats. Tweets my own. github.com/karissawhiting

Also at: fosstodon.org/@karissawhiting

ID: 1009536019736211456

calendar_today20-06-2018 20:38:38

477 Tweet

491 Followers

498 Following

Memorial Sloan Kettering Biostatistics Service (@mskbiostats) 's Twitter Profile Photo

📢 #MSKBiostats is #hiring a Research #Biostatistician! 👫Are you interested in collaborative projects in #CancerResearch, #biostatistics, #statistics or related field? Come join our team! 📌See link for full details: tinyurl.com/arbnew

Gothamist (@gothamist) 's Twitter Profile Photo

'Stonebreakers' screens at the Brooklyn Film Festival on Saturday. The 70-minute film is a meditative and often eerie documentary that confronts the legacy of monuments like NYC's Columbus Circle. gothamist.com/news/columbus-…

Memorial Sloan Kettering Biostatistics Service (@mskbiostats) 's Twitter Profile Photo

📢🚨🔥We are very excited to announce that Karissa Whiting will be our #MSKBiostats #guestcurator next week on Dec 4-8, 2023 💫Stay tuned to learn about the useful software packages our department has developed #biostatistics #CancerResearch #rstats cBioPortal Memorial Sloan Kettering Cancer Center

📢🚨🔥We are very excited to announce that
<a href="/karissawhiting/">Karissa Whiting</a> will be our #MSKBiostats #guestcurator next week on Dec 4-8, 2023

💫Stay tuned to learn about the useful software packages our department has developed #biostatistics #CancerResearch #rstats <a href="/cbioportal/">cBioPortal</a> <a href="/MSKCancerCenter/">Memorial Sloan Kettering Cancer Center</a>
Memorial Sloan Kettering Biostatistics Service (@mskbiostats) 's Twitter Profile Photo

Hi 👋 I’m Karissa Whiting, Research Biostatistician at Memorial Sloan Kettering Cancer Center and #guestcurator for the week. I hope to use this time to share info about some cool software we create & maintain at #MSKBiostats that may be useful to other researchers. First, a little about myself 👇🧵:

Memorial Sloan Kettering Biostatistics Service (@mskbiostats) 's Twitter Profile Photo

Let's break down an example using `clinfun::ph2simon()` (Venkat Seshan) and a set of example parameters: - 10% response rate considered unacceptable (`pu`) - 25% response considered desirable (`pa`) - Type I & type 2 errors set at 5% and 10% (`ep1`, `ep2`) #rstats #clinfun

Let's break down an example using `clinfun::ph2simon()` (<a href="/VeSeshan/">Venkat Seshan</a>) and a set of example parameters: 

- 10% response rate considered unacceptable (`pu`) 
- 25% response considered desirable (`pa`) 
- Type I &amp; type 2 errors set at 5% and 10% (`ep1`, `ep2`)  

#rstats #clinfun
Memorial Sloan Kettering Biostatistics Service (@mskbiostats) 's Twitter Profile Photo

{clinfun} also has many functions for #rstats data analysis. This example of `deltaAUC()` compares AUCs from nested models. Here we test adding weight loss (V2) to an existing risk model: Venkat Seshan Chaya Moskowitz Mithat Gönen Glenn Heller #AcademicTwitter #DataScience

{clinfun} also has many functions for #rstats data analysis.   

This example of `deltaAUC()` compares AUCs from nested models. Here we test adding weight loss (V2) to an existing risk model:

<a href="/VeSeshan/">Venkat Seshan</a> <a href="/ChayaSMoskowitz/">Chaya Moskowitz</a> <a href="/gonen_mithat/">Mithat Gönen</a> Glenn Heller #AcademicTwitter #DataScience
Memorial Sloan Kettering Biostatistics Service (@mskbiostats) 's Twitter Profile Photo

☀️The {genieBPC} `drug_regimen_sunburst()` #rstats function creates a beautiful and interactive visual overview of the drug regimens of your selected cohort More Info: genie-bpc.github.io/genieBPC/artic… #DataVisualization #DataAnalytics #CancerResearch

☀️The {genieBPC} `drug_regimen_sunburst()` #rstats function creates a beautiful and interactive visual overview of the drug regimens of your selected cohort

More Info: genie-bpc.github.io/genieBPC/artic… 

#DataVisualization #DataAnalytics #CancerResearch
Memorial Sloan Kettering Biostatistics Service (@mskbiostats) 's Twitter Profile Photo

{cbioportalR} (available on #cran and #GitHub) allows #rstats users direct access to🧬 genomic and clinical data from cBioPortal. Use it to easily navigate and browse the cBioPortal database structure (👇): karissawhiting.com/cbioportalR #DataAnalytics #CancerResearch #Genomics

{cbioportalR} (available on #cran and #GitHub) allows #rstats users direct access  to🧬 genomic and clinical data from <a href="/cbioportal/">cBioPortal</a>.

Use it to easily navigate and browse the cBioPortal database structure (👇):

karissawhiting.com/cbioportalR
#DataAnalytics #CancerResearch #Genomics
Memorial Sloan Kettering Biostatistics Service (@mskbiostats) 's Twitter Profile Photo

After pulling & QAing #genomics data, the {gnomeR} package (by Hannah Fuchs, Arshi Arora, Axel Martin, Karissa Whiting, Mike Curry and more) helps #rstats analysts process it into an analysis-ready format. Docs: mskcc-epi-bio.github.io/gnomeR/index.h… #rstats examples below 👇🧵