🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

Join us for our next Kipoi Seminar with Eric Nguyen from Chris Ré's lab Stanford University 👉HyenaDNA: Long-range Genomic Sequence Modeling at Single Nucleotide Resolution 📆Wed Feb 7, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

Our paper with Pelechano lab “Cellular energy regulates mRNA degradation in a codon-specific manner” now out at Mol Syst Biol! 1/n embopress.org/doi/full/10.10…

Excited to share Nicheformer! Led by Alejandro Tejada Lapuerta & @AnnaCSchaar, Nicheformer is a foundation model for single-cell & spatial omics. Its innovation is going beyond disassociated analysis to capture & predict local tissue context at single-cell level. biorxiv.org/content/10.110…

Join us for our next Kipoi Seminar with Thomas Pierrot Thomas Pierrot InstaDeep! 👉The Nucleotide Transformer initiative: building and evaluating robust foundation models for genomics 📆Wed May 8, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

More DNA language modeling at the Kipoi seminar: This Wednesday Thomas Pierrot will tell us about the nucleotide transformer and its applications. Looking forward!

Don't miss our next Kipoi Seminar with Sara Mostafavi Sara Mostafavi University of Washington! The meeting will not be recorded! 👉Machine learning models of differential gene expression 📆Wed June 5, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

I am really happy and excited to see CellRank 2 out in Nature Methods (nature.com/articles/s4159…)! Nature Methods Helmholtz Munich | @HelmholtzMunich Computational Health Center TU München Marius Lange Fabian Theis dana_peer (1/16)

Have you ever wondered what the genome looks like through the eyes of a DNA language model? In our newest preprint we use DNA LMs to study nucleotide dependencies in the genome, revealing functional elements, characterizing variants and evaluating DNA LMs tinyurl.com/6wbwjaf4

Want to aggregate rare variants into a single gene score while capturing diverse functional effects → Check out DeepRVAT, my first paper lead with Brian Clarke now out in Nature Genetics. DeepRVAT scores can be plugged into any testing framework to discover new disease genes.

7 years ago, I met a junior fellow named Jason Buenrostro who blew me away with a vision of futuristic genomic technologies Today, we (Ajay Labade, @carolinecomenho) are excited to share our first steps into that future: Expansion in situ genome sequencing 1/

Join us for the next Kipoi Seminar with with Abdul Muntakim Rafi (Rafi) Abdul Muntakim Rafi Carl de Boer University of British Columbia! 👉Detecting and avoiding homology-based data leakage in genome-trained sequence models 📅Wed Nov 6, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

Join us for our next Kipoi Seminar with with Dmitry Penzar, Dmitry Penzar @ autosome.org! 👉LegNet: parameter-efficient modeling of gene regulatory regions using modern convolutional neural network 📅Wed Dec 4, 5:30pm CET 🧬 kipoi.org/seminar/ 🦋@kipoizoo.bsky

Introducing Flashzoi⚡! We’ve upgraded the Borzoi model with rotary pos. encodings and FlashAttention, resulting in a 3x speedup with similar or better accuracy for faster variant effect prediction or model development, and more efficient genomic analysis biorxiv.org/content/10.110…