Lukas Forer (@lukfor) 's Twitter Profile
Lukas Forer

@lukfor

Assistant Professor of Genome Informatics. Co-Creator of Michigan Imputation Server @umimpute. Co-Lead of @askimed_com. Creator of nf-test.

ID: 342187007

linkhttp://www.forer.it calendar_today25-07-2011 16:30:27

1,1K Tweet

357 Followers

547 Following

Lukas Forer (@lukfor) 's Twitter Profile Photo

We've just released nf-test 0.9.0, with all the features described in our preprint! Check it out! 🚀 Thanks to all contributors!🙏 nf-core Nextflow Changelog: github.com/askimed/nf-tes…

Lukas Forer (@lukfor) 's Twitter Profile Photo

📚 Want to automate nf-test with GitHub Actions? 🚀 Check out our step-by-step tutorial for running nf-test on GitHub Actions. Learn how to distribute tests across multiple jobs and test only changed files for better efficiency. nf-core Nextflow nf-test.com/tutorials/gith…

Phil Ewels (@tallphil) 's Twitter Profile Photo

Great new functionality from Lukas Forer and co with nf-test. Running CI tests only on what's changing, and sharding to parallelise. Keeping those tests speedy is key for a streamlined developer workflow 🚀

Lukas Forer (@lukfor) 's Twitter Profile Photo

Excited to see an increasing number of plugins for nf-test and bioinformatics file formats! 🚀🧬 Check out the full collection of available plugins, including VCF, FASTA, BAM and CSV. 🧩 Explore all plugins here: plugins.nf-test.com

Evan Floden (@evanfloden) 's Twitter Profile Photo

3/ 🚀 nf-test is a simple testing framework for Nextflow pipelines. A new step-by-step tutorial for how to use it with GitHub Actions is out which includes only testing any changed files. ⏩ nf-test.com/tutorials/gith…

Jordan Mechner (@jmechner) 's Twitter Profile Photo

Prince of Persia development journal update from 35 years ago today (August 13, 1989): "Today I put in the mouse."🐭 The moment when the princess's friend unexpectedly shows up to help the prince is one of my favorite in the game. My friend Tomi suggested it... 1/7

Maxime U Garcia | @gau@scholar.social (@gau) 's Twitter Profile Photo

And finally some nice improvements on pipeline level tests using with nf-test thanks to nft-utils: github.com/nf-core/nft-ut…, a new nf-test plugin that we at nf-core just released yesterday.

Sebastian Schönherr (@seppinho) 's Twitter Profile Photo

Michigan Imputation Server, TOPMed Imputation Server, and Helmholtz Munich Imputation Server run all on our code. Now, we’re taking it a step further - anyone can build their own server. Watch my talk here: youtube.com/watch?v=ainEmE… #freeimputation

Lukas Forer (@lukfor) 's Twitter Profile Photo

Got an idea for an nf-test plugin but worried about writing it in Java? 😨 Check out my new nf-test plugin for FASTQ files, written in Groovy 🎉 #Nextflow nf-core github.com/lukfor/nft-fas…

Sebastian Schönherr (@seppinho) 's Twitter Profile Photo

This summer, Lukas Forer and I migrated the Michigan Imputation Server to Nextflow. 2M genomes later, we can say it was a big success. As a Christmas gift, we’re excited to show you how to set up your own local server in under 10 minutes. #freeimputation genepi.github.io/michigan-imput…