🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

For the 11th times, we delivered a #NetworkMedicine & Cytoscape training EMBL-EBI Training's Multiomics course. Great questions, smart participants & research-driven teaching atmosphere EMBL-EBI We covered OmniPath + use cases we've done Metabolism, Digestion & Reproduction & Earlham Institute W/ Marton Olbei

I’m organizing another Signaling Workshop this July for #PhDs #ECRs & Y-ECCO! ✅ Interdisciplinary: #IBD, #cancer, #microbiome, #organoids, #multiomics ✅ Networking: Leading experts from diverse fields ✅ Group projects 🔗 signalingworkshop.org Check video from 2023👇

🚀 The Interdisciplinary Signaling Workshop 2025 is taking shape! 🔬✨ A unique multidisciplinary program connecting #ECR & #PhD students with world-leading experts in #IBD, #microbiome, #organoids, & #PrecisionMedicine Details & registration by 4 April: signalingworkshop.org

Great news! 🍾 We are excited to host + support the HFSP fellowship of Inez Roegiers at Metabolism, Digestion & Reproduction Imperial Medicine This project to bioprint microbes & #organoids will have revolutionary impact on how we study host-microbe interactions & on the role of the #microbiome in #IBD! 👏

Final program for this year's Signaling Workshop is live! 2025.signalingworkshop.org/program.php 🎟️ Only 10 spots left! 💡Unique mix of speakers rarely at the same event 🌍Topics: #IBD, #Microbiome, #Organoids,#SystemsBiology, #PrecisionMedicine 🔗Register till 28 April: signalingworkshop.org

The first two integrated HCA Organoid Cell Atlases, from brain and endoderm tissues, are available on the HCA Data Portal. Congratulations to all involved! data.humancellatlas.org/hca-bio-networ…

The latest version of Kasumi is now published in Nature Comms nature.com/articles/s4146… Kasumi identifies patterns in tissue patches enabling analysis of disease progression and treatment response while providing insights into spatial coordination at cell-type or marker level

I’m happy to share that our scCellFie manuscript is finally on bioRxiv — a project that was an amazing opportunity to return to my roots in metabolism! We infer metabolic activity from single-cell & spatial transcriptomics 🧬 Read the pre-print here👇 📄 doi.org/10.1101/2025.0…

Ever wondered which method to use to infer kinase activities from phosphoproteomics data? 💻💭Our revised comprehensive evaluation of kinase activity inference tools, done in collaboration with the Zhang lab BCMHouston, is now out Nature Communications 🔬 tinyurl.com/4twuc6z4

Inspiring few days on how to identify mechanisms for #MyalgicEncephalomyelitis (ME) / Chronic Fatigue Syndrome. #SystemsBiology session w/ modoslab #Cytokines w/ Marton Olbei #organoids & new #Gutonchip + #microbiome platforms ImperialOrganoid Metabolism, Digestion & Reproduction Thanks for @invest_in_me (Invest in ME Research) 🇪🇺

🔧 decoupler 2.0.6 is out thanks to Pau Badia i Mompel, now as a core scverse package scverse.org This release includes a streamlined API aligned with scverse standards, updated vignettes, and a new one on pseudotime enrichment analysis 👇 decoupler.readthedocs.io/en/latest/

In Nature Biotechnology, CDS-affiliated Itai Yanai and Martin Lercher discuss how openness fuels discovery. They highlight the evolutionary nature of research, where ideas evolve through variation and selection, and advocate for embracing a creative process. nature.com/articles/s4158…

We’ve been named as 1st in the UK and 2nd in the world by QS QS World University Rankings! This recognises Imperial as one of the best places to study, research, work and grow. Thanks to everyone in our community for making this possible 💙 #QSWUR

Excited to share that I started a new chapter in my career as a Teaching Fellow at Imperial College London! I really enjoy teaching, and look forward to the opportunities and challenges ahead.

A huge win for the R community & kudos to the #tidyverse team! I'm super excited to try purrr 1.1.0 first thing in the morning 😻 tidyverse.org/blog/2025/07/p…

Great to see this work from Shiv Radhakrishnan and colleagues out in #GutMicrobes - using network analysis to explore #microbiome #metabolome interactions in an #IBD inception cohort: doi.org/10.1080/194909… Imperial Hepatology Metabolism, Digestion & Reproduction KorcsmarosLab

This #GutMicrobes paper has been a nice collaboration w/ Shiv Radhakrishnan, James Alexander & Prof Horace Williams. Our side was led by Marton Olbei. Great to finally analyse omics data of a real inception #IBD cohort to capture meaningful signals/markers not masked by therapy.

Everyone working in a STEM field should read this - ‘writing is thinking’ nature.com/articles/s4422…

🎉 The revised version of CORNETO, our unified Python framework for knowledge-driven network inference from omics data, is published in peer reviewed form 🔗 Paper: nature.com/articles/s4225… 📖 News & Views: nature.com/articles/s4225… 💻 Code: corneto.org 🧵 Thread 👇

Nice blogpost on "PhD-level" AI agents which hits on a concern I've also felt: their current failure modes are the zero tolerance nightmare scenario for an academic researcher (inventing references, manufacturing data, "solving" bugs by removing functionality, etc).