
Matt Lyon
@matt_s_lyon
Principal Bioinformatician, Wessex Genomics Laboratory Service
ID: 992126796467404800
03-05-2018 19:40:35
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64 Followers
283 Following





Our latest article has been published! The variant call format provides efficient and robust storage of GWAS summary statistics #VCF genomebiology.biomedcentral.com/articles/10.11⦠via Genome Biology

The variant call format provides efficient and robust storage of GWAS summary statistics now published in Genome Biology thanks to a massive collaborative effort from Shea J Andrews, Ben Elsworth, Tom Gaunt, gibran hemani and Edoardo Marcora rdcu.be/cdxdo #gwas #sumstats

There is no common format for reporting GWAS summary statistics. Matt Lyon, Andrews, gibran hemani, Edoardo Marcora and co show how the Variant Call Format can be adapted for this use. Compressed GWAS-VCF is faster than unindexed and uncompressed TSV genomebiology.biomedcentral.com/articles/10.11ā¦





Our latest preprint on detection of gene-interaction effects influencing biomarker concentration in UK Biobank. Performed using variance prioritisation with new #GWAS software (github.com/MRCIEU/varGWAS) Louise AC Millard george davey smith Tom Gaunt Kate Tilling NIHR Bristol Biomedical Research Centre (BRC) MRC IEU

GBMI multi-ancestry proteome MR is online now! Proteome-wide Mendelian randomization in global biobank meta-analysis reveals multi-ancestry drug targets for common diseases medrxiv.org/content/10.110⦠Tom Gaunt george davey smith @bmneale Wei Zhou Ben Brumpton gibran hemani




š”Pleased to finally share a pre-print of our work integrating Mendelian Randomization and literature-mined evidence from EpiGraphDB to investigate breast cancer risk factors and their mediators Tom Gaunt Tim Robinson Yi Liu Ben Elsworth MRC IEU ICEP




Our latest preprint examining the instrumental variable homogeneity assumption using instrument association with exposure variance as a measure of effect modification Louise AC Millard george davey smith Fernando Hartwig Tom Gaunt Kate Tilling NIHR Bristol Biomedical Research Centre (BRC) MRC IEU