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In the absence of a whiteboard ⁦Jordão Bragantini⁩ used a Labels layer to explain watershed segmentation during #skimage and ⁦napari🔬⁩ tutorial ⁦SciPyConf⁩ 🤣

Automatic detection of calcium waves with two napari🔬 plugins: conv-paint (segmentation) and ARCOS (collective events). Links below :)

We've just released the "brainmapper" widget allowing analysis of cellular distributions in whole-brain microscopy images entirely within napari🔬. Full details available on the blog: brainglobe.info/blog/brainmapp…

It was a pleasure to have Marcelo Zoccoler present and do hands-on on napari🔬 on our workshop! If you missed his session, you can check his #OpenAccess resources on Zenodo.

New preprint: We have developed an integrated pipeline to i) image gastruloids in toto with dual-view 2-photon🔬, ii) quantitatify cell and tissue-scale patterns of gene expression and morphometric features, iii) interact with the data in napari🔬. biorxiv.org/content/10.110…

🚨📢Our paper on imaging, segmenting, visualising and measuring patterns in gastruloids across spatial scales w/ napari🔬 is out‼️ An project led by Alice Gros, Jules Vanaret, Valentin Dunsing-Eichenauer et al.🤓 A collab. between Lenne Lab, Philippe Roudot's and our lab. ⬇️Link⬇️

We are organizing with Giulia Paci and Marie Held 👩‍💻🔬💻🖼🔢 the Crick BioImage Analysis Symposium napari🔬 Workshop 2024 at The Crick : 27-28 November 2024 Applications by: 15 September 2024 Introduction to conda environments, napari plugins, basic #bioimageanalysis with Jupyter Notebooks and napari

these dancing cells kill people! video done completely with open source software: stardist for segmentation, trackpy for tracking, napari🔬 for visualisation, Blender 🔶 for video editing

Sneak peek👀: Remember the napari🔬 napari-clusters-plotter? We are scaling up⬆️! New plotting by Marcelo Zoccoler along with other major upgrades makes cross-layer clustering possible. It’ll take a bit (0.9.0🪧), but we’re developing in the open: github.com/BiAPoL/napari-…

Super stoked that Jordão Bragantini 's napari🔬 plugin for Meta's Segment Anything Model 2: napari-sam2, as well as our cell tracking software ultrack were showcased during Chris Cox's Keynote at Meta's Connect 2024. Jordao and I were in the audience; it was great fun!

Loïc A. Royer 💻🔬⚗️ Jordão Bragantini napari🔬 Napari is very cool. I use it in my Python toolchain for astrophotography.

Aquiles Carattino Loïc A. Royer 💻🔬⚗️ Jordão Bragantini napari🔬 Visualizing individual shots so I can make a selection before aligning and stacking them. Being able to navigate between shots in the stack is very convenient.

Hello naparistas! Core dev Grzegorz Bokota has been hard at work to improve the performance of Shapes layers. We've now released napari 0.5.6rc0 with the option to turn on C++ acceleration of Shapes layer creation. Check out our ✨brand new blog✨ for details! napari.org/island-dispatc…