Nils Gehlenborg (@ngehlenborg) 's Twitter Profile
Nils Gehlenborg

@ngehlenborg

Faculty @harvarddbmi. Data Visualization. Biomedical Informatics. Genomics. Epigenomics. Cancer Biology. Single-Cell X. EHR UI. mHealth Data.

ID: 732887081513426946

linkhttp://gehlenborglab.org calendar_today18-05-2016 10:54:31

250 Tweet

227 Followers

214 Following

Nils Gehlenborg (@ngehlenborg) 's Twitter Profile Photo

The beauty of biology is in its messiness. The beauty of informatics is in helping us see patterns within that chaos —without flattening its complexity.

Corin Wagen (@corinwagen) 's Twitter Profile Photo

We're excited to launch a new Rowan workflow for subscribers today—macroscopic pKa prediction! We use a retrained Uni-pKa-based model ("Starling") to quickly predict per-microstate free energies, and use these values to compute pKa, pI, logD, & blood–brain-barrier permeability:

Nils Gehlenborg (@ngehlenborg) 's Twitter Profile Photo

I’ve always believed the most powerful tools in science are the ones that disappear. When interaction becomes intuition, and data becomes insight. That’s when we’re doing real work.

Kyle Tretina, Ph.D. (@allthingsapx) 's Twitter Profile Photo

More use of AlphaFold2 ensembles: 557 peptides, 80 poses each, with ensemble RMSD < 2.5 Ă…, RMSF < 1.5 Ă… vs NMR. Interestingly, MSA depth? Largely irrelevant. Sequence alone is hinting at dynamics, not just shape.

More use of AlphaFold2 ensembles: 557 peptides, 80 poses each, with ensemble RMSD &lt; 2.5 Ă…, RMSF &lt; 1.5 Ă… vs NMR. 

Interestingly, MSA depth? Largely irrelevant. 

Sequence alone is hinting at dynamics, not just shape.
Nils Gehlenborg (@ngehlenborg) 's Twitter Profile Photo

95% of meaningful progress happens behind closed doors, long before it becomes visible to the world. The ones who stay consistent without applause end up defining the future.

Kyle Tretina, Ph.D. (@allthingsapx) 's Twitter Profile Photo

35 teams, 10k structures later ... not one model could predict how a 6-aa linker positions two rigid domains. CASP16’s SAXS + RDC benchmark exposes the “dynamics gap” left by AlphaFold-era models — and calls for continuous SE(3) ensembles. Which next-gen BioAI will finally

35 teams, 10k structures later ... not one model could predict how a 6-aa linker positions two rigid domains. 

CASP16’s SAXS + RDC benchmark exposes the “dynamics gap” left by AlphaFold-era models — and calls for continuous SE(3) ensembles. 

Which next-gen BioAI will finally
Nils Gehlenborg (@ngehlenborg) 's Twitter Profile Photo

Biology is messy, chaotic, unpredictable. AI brings structure, prediction, and possibility. The intersection between the two is where the next generation of medicine will be born.

Isomorphic Labs (@isomorphiclabs) 's Twitter Profile Photo

An insightful day at our London office yesterday! We were thrilled to host Prof Sir Mene Pangalos FRS, a distinguished member of our Scientific Advisory Board. Our Chief Scientific Officer, Miles Congreve, led a fascinating fireside chat with Sir Mene, diving into crucial topics like selecting the

An insightful day at our London office yesterday! We were thrilled to host <a href="/MenePangalos/">Prof Sir Mene Pangalos FRS</a>, a distinguished member of our Scientific Advisory Board.
Our Chief Scientific Officer, <a href="/MilesCcc/">Miles Congreve</a>, led a fascinating fireside chat with Sir Mene, diving into crucial topics like selecting the
Nils Gehlenborg (@ngehlenborg) 's Twitter Profile Photo

We’re not short on data. We’re short on systems that make complexity understandable. The next frontier isn’t scale. It’s clarity.

Kyle Tretina, Ph.D. (@allthingsapx) 's Twitter Profile Photo

AI agents for autonomous discovery still surprise me. El Agente turns plain-English prompts into fully debugged ORCA workflows, auto-recovers from runtime errors, and exports an auditable Jupyter log. It scored 88%+ on six university-level tasks.

AI agents for autonomous discovery still surprise me.

El Agente turns plain-English prompts into fully debugged ORCA workflows, auto-recovers from runtime errors, and exports an auditable Jupyter log. 

It scored 88%+ on six university-level tasks.
Alan Karthikesalingam (@alan_karthi) 's Twitter Profile Photo

⚕️🧪Delighted to share extended lab validation results for our Google DeepMind Google AI AI co-scientist! Great work from our collaborators Stanford Medicine validating novel insights in liver fibrosis, a condition that affects millions with few effective therapies. More details from

Isomorphic Labs (@isomorphiclabs) 's Twitter Profile Photo

One year ago today, we published the breakthrough AI model #AlphaFold 3 together with @GoogleDeepmind. AlphaFold 3 allows researchers to model the structures and interactions of all of life’s molecules with unprecedented accuracy. With the ability to model proteins, DNA, RNA, and

One year ago today, we published the breakthrough AI model #AlphaFold 3 together with @GoogleDeepmind. AlphaFold 3 allows researchers to model the structures and interactions of all of life’s molecules with unprecedented accuracy.
With the ability to model proteins, DNA, RNA, and
Nils Gehlenborg (@ngehlenborg) 's Twitter Profile Photo

The future of medicine isn’t just in molecules it’s in models. As AI learns to reason through biological complexity, we shift from describing life to debugging it.

Nils Gehlenborg (@ngehlenborg) 's Twitter Profile Photo

Most infrastructure isn’t flashy. It’s silent, robust, and thankless until something breaks. That’s when you realize who built carefully, and who just built.

Nils Gehlenborg (@ngehlenborg) 's Twitter Profile Photo

The most important work feels boring to watch. It’s hard, slow, and rarely optimized for social media. But it’s the only work that lasts.

Nils Gehlenborg (@ngehlenborg) 's Twitter Profile Photo

We’re entering an era where AI isn’t just reacting to data. It’s starting to navigate systems. From biology to markets it’s not a chatbot revolution. It’s a systems revolution.