Host and microbiome jointly contribute to environmental adaptation nature.com/articles/s4139…

annualreviews.org/doi/full/10.11…

The gut microbiota and its biogeography | Nature Reviews Microbiology nature.com/articles/s4157…

APOLLO: A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites biorxiv.org/content/10.110…

On automated tools and not thinking about the results and no verification was done by looking at the raw data. Much of this could have been discovered if one spot checks the raw data for annotations with mirror plots and look to see if the lowest intensity peaks are real etc. 2/n

Microbiome diversity protects against pathogens by nutrient blocking 💡 science.org/doi/10.1126/sc… "microbiota will collectively consume the nutrients that an incoming species requires to grow and establish in a host"

“Shifting microbial communities can enhance tree tolerance to changing climates”

AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods biorxiv.org/content/10.110…

“Cryptic diversity of cellulose-degrading gut bacteria in industrialized humans”

“Fermentation practices select for thermostable endolysins in phages”

The future of gut microbiome manipulation in medicine laid out here is remarkable sciencedirect.com/science/articl… William Fusco ElinavLab Gianluca Ianiro Giovanni Cammarota Hugh Thomas The Lancet Gastroenterology & Hepatology

New APC paper out in Cell Reports today outlines what is going on in the #stressedgut and highlights host-microbe interactions important for #rhythms in #tryptophan metabolism and gut barrier function UCC Ireland UCC Research @scienceirel ➡️ bit.ly/3PZ3L8B

The gut microbiome signature from different diets in >20,000 individuals. Red meat intake correlated with reduced cardiometabolic health; the opposite for plant-based foods or in omnivores with enriched plant-based intake nature.com/articles/s4156… Nature Microbiology Nicola Segata

Metagenome-guided culturomics for the targeted enrichment of gut microbes nature.com/articles/s4146…

Writing in Nature Reviews Microbiology, a group of scientists updates the healthy human microbiome concept by combining independent measures of both the host and the microbial community health Find out more: loom.ly/nb9mH3w

Toward a health-associated core keystone index for the human gut microbiome dlvr.it/TJHxMn

Interesting (I hope) Perspective by the wonderful Mary Ellen Sanders and me APC Microbiome Ireland Microbiology UCC The microbiome: An actor or stage for the beneficial action of probiot... sciencedirect.com/science/articl…

The microbiome: An actor or stage for the beneficial action of probiotics, prebiotics, synbiotics, and postbiotics? Perspective by Sanders & Hill examining evidence that health benefits of “biotics” result from impacts on the microbiome. cell.com/cell-host-micr…

Very excited to share our latest work in Nature Genetics w/ Christopher Smillie’s lab: a spatial transcriptomics atlas of stricturing #Crohns disease that offers new insights into mechanisms driving fibrotic complications in chronic gut inflammation...(cont.) nature.com/articles/s4158…

New online! Large language models for clinical decision support in gastroenterology and hepatology bit.ly/47FXYhR