🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

Some personal news: I'm looking for a job! tomaugspurger.net/posts/leaving-… Some of my (very talented) former teammates are also looking for a job, so reach out if you're hiring!

WebAtlas for visualising single cell & spatial data online is out: rdcu.be/dRsKu With Muzlifah Haniffa Tong LI 李彤 Dave Horsfall+co, we aimed to open up sc/spatial data to biologists & clinicians without coding experience/infrastructure. Rambling🧵on why this matters

I'm very excited to announce the #OME_NGFF_workflows_hackathon for November 18th - 22nd at the BioVisionCenter in Zurich, Switzerland. Sign up here: ema.uzh.ch/en/register/om… (1/n)

It's great to be at #EMC2024 and learn more about all the different microscopy techniques. I will be presenting a poster on Fractal, our framework for scalable image analysis in OME-Zarrs on Wednesday afternoon (poster 58), feel free to stop by if you're there as well!

🎉Amazing update for #TiM2025! We’ve received a record number of workshop submissions! 🚀 Acceptance notifications will be sent out on 21 October. Thank you to all who submitted. Plus, the preliminary program is now up on our TiM page – have a look! 🔗gerbi-gmb.de/event/tim2025/

our work on vitessce is out in Nature Methods!

🚨 Reminder: The Zarr-Python V3 documentation sprint is happening tomorrow — 30th September to 1st October! 📝 Don’t miss the chance to help shape the new V3 docs and make a lasting impact on the project. 🏃🏻‍♂️ More info here: github.com/zarr-developer…

Microscopy Nodes 2.0 is out! This includes a new channel interface and OME-Zarr support! 🔬🎉 youtube.com/watch?v=ybQcKE…

And with OME-Zarr loading, due to the pyramidal format, you can design your video at small-scale and only replace to full-scale at the final render! (data from Granita Lokaj, @ s3.embl.de/microscopynode…)

If you didn't yet have enough good reasons to share your bioimage data, Matthew (BioImage Archive), Josh (Josh Moore), Erin (@tuesdaystitches), Assaf (Assaf Zaritsky) and I are here with squirrel drawings to convince you that you should do it: journals.biologists.com/jcs/article/13…

It's great to be at #I2K2024 #i2k and see (almost) everyone in bioimage analysis. If you're interested in OME-Zarrs or what we're doing with Fractal, stop by my poster today! :)

Xarray v2024.10.0 has just been released, including support for xarray.DataTree and zarr-python v3 !!! github.com/pydata/xarray/… Xarray zarr_dev

This is one of Xarray's biggest releases in years. Go check out DataTree and Zarr v3 support and tell us what you think!

If you've ever wondered about rendering zarr_dev in Blender 🔶, you should check out Oane Gros's video! 🤩

Kicking off the OME-NGFF #hackathon 2024 University of Zurich today! 🚀 With funding kindly provided by @NFDI4BIOIMAGE, we are bringing together experts on #OME #Zarr in Python, Java & image analysis workflows. Follow for updates on the future of a #FAIR bioimaging standard.

In their Perspective article, Virginie Uhlmann, Matthew Hartley, Josh Moore, Erin Weisbart and Assaf Zaritsky tell us how we can make the most out bioimage data through interdisciplinary interactions. journals.biologists.com/jcs/article/13… #JCSImagingSI

This week, we're hosting the #OME_NGFF_Hackathon 2024 at the BioVisionCenter at University of Zurich. We're bringing together 40 motivated researchers and specialist for #OMEZarr workflows, #OMEZarr Python tools & #OMEZarr Java tools. (1/3)

This hackathon wouldn't be possible without the following co-organizers: Virginie Uhlmann , Lorenzo Cerrone & Ethel Mendocilla Sato from the BioVisionCenter team Josh Moore, Vladimir Ulman, Norman Rzepka 🇺🇦, Eric Perlman, Christian Tischer (2/3)

🚀 Applications for a Software Developer position at GerBI close on 31st January. Don’t miss out & apply now!

🎉 Zarr-Python 3 is here! 🎉 - Full support for Zarr v3 spec - Chunk-sharding for more efficient data storage - Major performance boosts with async I/O & parallel compression 💻 pip install --upgrade zarr Blog post: zarr.dev/blog/zarr-pyth…