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I've been playing with a couple of new-ish single-cell methods in a repo to accompany the MouseGastrulationData package, with the idea of providing reproducible examples so others can use them on their data Submit a PR if you want to help! It will grow. github.com/jonathangriffi…

The UK government is slow on Covid, sure. However, it beggars belief that it has taken NEARLY AN ENTIRE YEAR from the start of the outbreak in the UK to enact proper regulation around quarantine and testing on flights. A YEAR!

E8.5 seqFISH data from Tim Lohoff/Shila Ghazanfar/Cai Lab is on MouseGastrulationData devel now! Count matrices, annotation, spot locations, cell segmentation masks, imputed Tx-wide counts - the whole shebang. Give it a go for methods work or dev bio! bioconductor.org/packages/devel…

Registration now open for our symposium - "Biostatistic for chronic diseases". Attend either virtually or in-person in central Cambridge! Great range of speakers, including Hélène Ruffieux Stephen Burgess Francesca Guillermo Reales @ManuelaZucknick and Vincent eventbrite.co.uk/e/biostatistic…

Our team at @Genomicsplc is hiring a Senior Scientist! You'll join an incredible team using the largest genotype-phenotype database on the planet to identify novel drug targets - DM me for details + informal enquiries jobs.lever.co/genomicsplc/45…

Last week I joined Altos Labs! I'm excited to see what we can achieve in this unique organisation, where I'll be contributing from the ML/AI team.

Does anyone know any solid scRNA-seq datasets with paired imaging of the cells? Just conventional bright-field imaging. Several commonly-used platforms allow this but I hardly see the cell images made available with the paper.

There's an opening for a senior AI/ML team lead at Altos. Please apply or share this with people who might be interested - it's a great opportunity. I've been loving working here so far! DM me if you would like more info. boards.greenhouse.io/altoslabs/jobs…

Come and join us at Altos Labs! We have a computational biology position available for a range of experience levels. It's a great place to work, with exciting science and lovely people. boards.greenhouse.io/altoslabs/jobs…

The wonders of population genetics allow us to reveal the echoes of the tumultuous times our ancestors survived, forever imprinted in our genome. In this thread, I'll share my experience replicating one of my all-time favourite papers by Heng Li and Richard Durbin

Candidate for the most deranged figure ever?

I’ve started using “the other app” almost exclusively now - it is a way, way better experience. Same handle, and I hope to see more of you there!

Come and join us at Altos Labs, using human genetics to reverse disease by targeting cell health and resilience boards.greenhouse.io/altoslabs/jobs…