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Thrilled to share our work involving microbiome data & crowdsourcing to predict preterm birth. Our collaboration of >50 authors worldwide is published today in Cell Reports Medicine: cell.com/cell-reports-m…. Conceived & led by Marina Sirota, also led by Jonathan Golob, MD PhD, and funded by March of Dimes.

An opportunity to share our AI/ML work -- DREAM challenge (cell.com/cell-reports-m…), UCSF AI4ALL high school students AI training program AI4ALL-UCSF (pubmed.ncbi.nlm.nih.gov/35100256/), AD prediction leveraging ML+EMR (doi.org/10.1101/2023.0…) -- at the UCSF Department of Medicine leadership retreat

A live demo by Brenda Miao of the 'Clinical decision trees with Large Language Models' research tool with Bob Wachter at last night's UCSF Department of Medicine leadership retreat. UCSF Bakar Computational Health Sciences Institute Atul Butte Boris Oskotsky

Our collaborative work to identify therapeutic candidates for endometriosis leveraging a drug repositioning approach now in iScience journal cell.com/iscience/fullt… tomiko oskotsky 🤨 Dan Brian Le Alice Summer Tang Idit Kosti Stacy Mcallister Marina Sirota + many more

One of the first discovery efforts from our Stanford University UC San Francisco ENACT center (enactcenter.org) published in iScience journal. Computational drug repurposing for endometriosis - congrats tomiko oskotsky, 🤨, Dan, Stacy Mcallister, Linda Giudice and team! Sirota Lab at UCSF

sharing our perspective on data driven insights to move the needle on women’s/reproductive health- too long has this population been excluded from scientific and clinical research!!! 👀 Sirota Lab at UCSF tomiko oskotsky UCSF Obstetrics Gynecology & Reproductive Sciences UCSF Center for Maternal-Fetal Precision Medicine rdcu.be/dHUXA

Our latest work that discusses harnessing electronic health records data for health research, published today in Nature Medicine. Kudos to Alice Summer Tang Sarah Woldemariam, Silvia Miramontes, Beau Norgeot Marina Sirota! Sirota Lab at UCSF UCSF Bakar Computational Health Sciences Institute UCSF Precision Medicine UC San Francisco

Day #1 of our 2024 program is off to a great start with our awesome class and a great talk by our founder and director Marina Sirota that highlighted an application of #AI to #microbiome data in the Preterm Birth Prediction DREAM crowdsourcing challenge!

Day #2! TYSM Ida Sim for sharing your inspirational journey, insights into your trailblazing data-sharing work, and wonderful pearls of wisdom with our students today

Day #3! Thank you Jean Feng for sharing with our class your high school experiences including running🏃‍♀️ and robotics🤖, and your current research work involving rigorous algorithms💻 for healthcare⚕️🏥, and for answering our students' many questions! #MachineLearning #AI

Day #4! TYSM🙏 to our alum/undergrad panelists Nancy Deng, Isabella Garcia, Brenda Samano + our PHENOMENAL teachers Nikita Bedi, Haoyu Fan, Augusto Garcia-Agundez, Avni Kothari, Albert Lee Alex J Li Karla Lindquist zack mawaldi Hunter Mills, Thanhbinh Nguyen, Harvineet Singh 🤩

Day #5, and Week 1 is done! Thank you to Sergio Baranzini for talking with our students and sharing your inspiring work with SPOKE (spoke.ucsf.edu) and its applications in drug repositioning💊, disease prediction, understanding health in outer space🚀, and so much more!

Day #6! Thank you Katie Pollard! Our students learned so much from you today about how #AI #ML can leveraged to explore causality for genetic diseases, optimize immune cell therapy, design therapeutic phages, and more!

Day #8! Huge thank you to Madhumita Sushil for sharing your inspiring journey with our high school students as well as insights into your fascinating work involving language models and electronic medical records to advance healthcare! #AI #LLM #NLP

It was an absolute pleasure to discuss my journey into medical NLP and path to UCSF! Thanks tomiko oskotsky and Marina Sirota for the opportunity! UCSF Bakar Computational Health Sciences Institute

Please join us next Friday, 7/26 for the UC San Francisco AI4ALL Final symposium (virtual)! Keynote: Jessica Tenenbaum. The program students will be presenting their group research projects involving different applications of AI to Biomedicine: calendar.ucsf.edu/event/ucsf-ai4…

Day #9! Thank you so much Dr. Julian Hong Julian Hong for sharing with us many super cool ways of implementing AI from predicting #marchmadness results to improving #Cancer care. #radonc #informatics #datascience #NLP #machinelearning

Day #11, the start of our final week! Huge thank you to Sara Murray for talking with our high school students and for your thrilling presentation on how #GenerativeAI can reshape and revolutionize patient care, research, and more! #AIinHealthcare #HealthTech #Innovation

Excited to share our preprint "Anticlustering for Sample Allocation To Minimize Batch Effects", of work led by Martin Papenberg Heinrich-Heine-Universität Düsseldorf, biorxiv.org/content/10.110… Interactive visualization & web-based batch assignment tool with must-link feature available! anticlust.org

Join the UC San Francisco Stanford University Enact webinar on Wed., 3/26 w/ BCHSI team "AI, Research, and Future Innovations for Endometriosis and Beyond in the Era of Precision Medicine" Marina Sirota tomiko oskotsky Umair Khan - Details here enactcenter.org