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AI for research: the ultimate guide to choosing the right tool nature.com/articles/d4158…

CoverM is published! CoverM: Read alignment statistics for metagenomics academic.oup.com/bioinformatics…

Genome-streamlined SAR202 bacteria are widely present and active in the euphotic ocean academic.oup.com/ismej/advance-…

Moving from genome-scale to community-scale metabolic models for the human gut microbiome nature.com/articles/s4156…

Strobealign v0.16.0 has been released. It comes with both runtime and accuracy improvements. Full changelog here github.com/ksahlin/strobe…

1/ In our new paper, we explored whether obligate mutualisms can survive abrupt stress via evolutionary rescue. We found that evolutionary rescue is possible—but it comes at the cost of mutualism. Jonathan Friedman Alex Couce nature.com/articles/s4146…

Wine Fermentation as a Model System for Microbial Ecology and Evolution …icro-journals.onlinelibrary.wiley.com/doi/10.1111/14…

Genomes of Prochlorococcus, Synechococcus, bacteria, and viruses recovered from marine picocyanobacteria cultures based on Illumina and Qitan nanopore sequencing nature.com/articles/s4159…

What is the most highly cited paper in the scientific literature? go.nature.com/3XYnNUV

Our commentary describing the potential of designed #microbial #consortia for sustainable #waste management and #climate resilience is out! You can check it here sciencedirect.com/science/articl… to the authors Ginevra Giangeri Irini Angelidaki Nikos Kyrpides - Department of Biology – University of Padova DTU-bioenergy Joint Genome Institute

📣🦠 Request for input! Have you used or thought about using the Digital Microbe framework (nature.com/articles/s4159…) in your research? If so, please send us a DM - we would love to hear from you!

Starvation drives co-existence in cross-feeding bacterial populations biorxiv.org/content/10.110…

"Many scientists know from the start that they want to be academic researchers. But for others the path unfolds gradually, with spurts of doubt and uncertainty along the way. In a way, that’s fitting." #ScienceWorkingLife scim.ag/3R8PtCK

Work non-stop Panic about all the work you still have left Try to take a break Panic about all the work you still have left

Microbial model communities reveal widespread auxotrophies in abundant bacteria by Armando Pacheco-Valenciana et al. Our results highlight the value of cultivating microorganisms in groups to cultivate: 1) abundant microorganisms tinyurl.com/miintmodcom

More resources, less diversity? Our new preprint reveals that increasing resource diversity can reduce microbial biodiversity—contrary to classical ecological theory. Luckily, we understood why this happens. Read more: biorxiv.org/content/10.110… #MicrobialEcology #Biodiversity

When is microbial cross-feeding evolutionarily stable? | bioRxiv biorxiv.org/content/10.110…

Mighty microbes — the invisible forces that can save the world nature.com/articles/d4158…

Microbial communities can harbor many species that do not coexist in pairs, yet can coexist in the full community. Here we provide the mathematical foundations of emergent coexistence, and explain why it can't be predicted from pairwise tests biorxiv.org/content/10.110…