Historic moment. We have our first RISC-V machine up and running cnx-software.com/2020/07/20/pol…

We released sambamba 0.8.0 github.com/biod/sambamba/…

We released GEMMA version 0.98.3 github.com/genetics-stati…

We released vcflib 1.0.2 today github.com/vcflib/vcflib/…

Freebayes v1.3.4 released with static binary github.com/freebayes/free…

To day I posted a major update to a preprint I first shared 5 years ago. My team has scattered around the world and new authors have been added who brought fresh new ideas. biorxiv.org/content/10.110…

Cool presentation by @Joepdl on the New Zealand fight against COVID-19 and the elimination strategy. Thanks Pjotr Prins ipfs.genenetwork.org/ipfs/QmcYJhLMu…

Our VCF paper is on biorxiv biorxiv.org/content/10.110…

Vcflib and tools for processing the VCF variant call format biorxiv.org/content/10.110…

Someone asked on hackernews if a programmer's useful life is over at 35. I'm well into my 60's and am doing my best work yet. Code I wrote at 35 looks like complete crap to me today. I'm surprised it even worked.

Testing out the NVIDIA AGX setup for MinION sequencing according to Miles Benton notes, not that I have anything to sequence at the moment Everything works well I guess

On Oct. 8th, National Cancer Institute held a webinar on #reproducible #FAIR workflows, #CWL, and #Guix with Pjotr Prins and Arun Isaac: events.cancer.gov/nci/cwig-webin… 👍 #OpenScience

Making a little lisp that can transpile into a cleaner subset of javascript known as "Jessie" The project is called "Team Rockit" and the lisp is called "James"; James transpiles into Jessie What if James and Jessie were the same person the whole time you don't know

Our NIH/NCI talk on GNU Guix containers and CWL is online! events.cancer.gov/nci/cwig-webin… Guix HPC Project genenetwork Common Workflow Language project

freebayes 1.3.6 released. Ever popular it is even faster thanks to htslib improvements. github.com/freebayes/free… Erik Garrison genenetwork Samtools Team

Vcflib and related tools are the workhorses in bioinformatics for processing the VCF variant calling format. New 1.0.3 release thanks to many contributors! github.com/vcflib/vcflib/…

🧬 Do you think pangenomics is hot? Attend our Workshop, Conference & Biohackathon (May 18-22, 2024). Discover genomic diversity, engage with leading scientists, and contribute to cutting-edge software. Register now! pangenome.github.io/MemPanG24/ #Pangenomics #Bioinformatics #MemPanG24