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Another great piece of research funded by the Horizon 2020 DD-DeCaF project. Congrats the real LCSB and Pierre Salvy

Why are vitamins added to chemically defined yeast media? Was decided in the 40's and not questioned much afterwards. Find answers and perspectives in the latest review of @yeast_journal's yeast extracts series. By Thomas Perli and Anna Wronska (PAcMEN - ITN) onlinelibrary.wiley.com/doi/abs/10.100…

Avec l'avis d'Olivier Rolland TWB (Toulouse White Biotechnology) : émission @bleuoccitanie lundi 27 janvier à la minute 33:55 france3-regions.francetvinfo.fr/occitanie/emis…

Congrats to my flatmate Roeltje_Maas for her groundbreaking work on immune microenvironment of brain tumors! sciencedirect.com/science/articl…

Congratulations to Maria, Meriç, and Vassily for their latest paper, the first systematic reduction of a human Genome-scale model ! Analysis of human metabolism by reducing the complexity of the genome-scale models using redHUMAN nature.com/articles/s4146…

Wanna know what happens inside E.coli when it has too much to eat ? My preprint on the use of dynamic ME-models to study diauxie in E. coli is out! Big thanks to @Vassily_13 PAcMEN - ITN DD-DeCaF for the help along the way doi.org/10.1101/2020.0…

Happy to share this awesome research I contributed to during my PhD! A ME-model for Saccharomyces cerevisiae (a eukaryotic ME-model!), shows off Crabtree effect and its root causes in the cell proteome. biorxiv.org/content/10.110…

Happy to share my 1st paper the real LCSB that is the 1st ME-model for a eukaryote! Wonder to know what a ME-model is? A cool tool to model cell expression & metabolism! With big thanks to Vassily Hatzimanikatis, Pierre Salvy , Maria, Misko, Maxime. biorxiv.org/content/10.110…

A novel ME model for S. cerevisiae! The latest work from Omid Oftadeh, Pierre Salvy, Maria, Maxime, Misko, and @Vassily_13 now available as a preprint: biorxiv.org/content/10.110…

Constants in big-Oh notation are typically like the calorie count in a kouign-amann: there is one; it's better for everyone not to ask about it.

GANs for kinetic models in biology -- Super happy to see this project finally come to light! A paper I co-authored along with Subham (thanks for the heavy lifting!), Michael, Daniel R. Weilandt, Ph. D., Misko, and Vassily Hatzimanikatis biorxiv.org/content/10.110…

Our latest work is online (biorxiv.org/content/10.110…)! In this study, we used GANs—a deep learning generative model—in metabolic engineering (for kinetic models). Sounds interesting? Thread (1/11)

super excited to share that yesterday was my first day as a Visiting Professor EPFL - i will be in Lausanne, Switzerland for six months! Lausanne - Olympic Capital

Open source kinetics for all ! Such a pleasure to see this coming to light some years after the revelation we had over a beer with Daniel R. Weilandt, Ph. D. !

Hello everyone!! We are delighted to showcase, RENAISSANCE, a novel generative ML-based framework to efficiently parameterize kinetic models of metabolism directly from steady-state information. biorxiv.org/content/10.110…

Did you like our last paper on #transferlearning and #gans for genome-scale kinetic models ? Well, the team carried on and they released this GEM (pun intended) today in #Biorxiv biorxiv.org/content/10.110…

Cambrium 🔬 #TheNewWayToCloud: Designing sustainable protein biomaterials with the help of #AI.