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QuickDeconvolution is out! Very happy to have developed that within the GenScale Team. Deconvolve your linked reads data to finally have one cloud per barcode. academic.oup.com/bioinformatics…

1) Assemblers do not like structural heterogeneity! Often results in a misassembly. 2) Some misassemblies are completely mysterious and have no clear cause. 3) Assembly can be non-deterministic: re-running an assembly with identical parameters can give a different result. (2/2)

Very happy to receive the best student's paper award at the Bioinformatics part of BIOSTEC2024 conference 🥳! Work on using ILP to improve metagenomic assembly. Soon on biorXiv. With Rumen Andonov and Tam Truong in the GenScale Team.

[1/11] Thrilled to announce our latest preprint on function-assigned masked superstrings (shortly, f-masked superstrings or f-MS), which transform masked superstrings into an operationally complete data type for k-mer sets. w/Ondřej Sladký and Pavel Veselý

Soon, we will see more long and ultra-long read technologies that combine sequencing, sequence alignment and AI for error correction. I am proud that our lab has contributed to this by github.com/lbcb-sci/racon github.com/Martinsos/edlib and github.com/lbcb-sci/herro,

In what journal do you publish? I am looking for well-established bioinformatics journals with reasonable APC, but I can't find anything below $3000 😓

Today we’re excited to freely share an early-version of, perhaps, the world’s most expansive genetics dataset: Logan. #bioinformatics #petabase #genetics #genomics #openscience biorxiv.org/content/10.110…

A new nanopore sequencer from BGI biorxiv.org/content/10.110… Unfortunately, they do not provide reads to evaluate them.

FroM Superstring to Indexing: a space-efficient index for unconstrained k-mer sets using the Masked Burrows-Wheeler Transform (MBWT) biorxiv.org/cgi/content/sh… #biorxiv_bioinfo