Major thanks to Vincent Noël (@vincent-noel.fr on BlueSky), Marco Ruscone, PhD, Daniel Bergman, and Randy Heiland for contributions to this release! And thanks to the community for continued interest and growth--we're so grateful!! Please download at GitHub or SourceForge via: physicell.org/downloads/

NPR is saying goodbye to Twitter and so am I. Our CEO writes “the platform is taking actions that undermine our credibility by falsely implying that we are not editorially independent.” Find us anywhere else. Find me on instagram @leilafadelnpr

Post-rain dog walk sightings.

Seen on morning dog walk. What a beauty. At least someone doesn’t mind the rising humidity.

The Center for Open Science celebrated its 10th anniversary with an event at the National Academies. We told the story of reforming the research culture toward openness, integrity, and reproducibility. This thread provides some highlights. 1/ cos.io/blog/cos-celeb…

Bravo! Gil Strang's Final 18.06 Linear Algebra Lecture youtube.com/live/lUUte2o2S… via YouTube

* People ask LLMs to write code * LLMs recommend imports that don't actually exist * Attackers work out what these imports' names are, and create & upload them with malicious payloads * People using LLM-written code then auto-add malware themselves vulcan.io/blog/ai-halluc…

A much needed call from Paul Macklin to create a “Modeling Grammar.” A dictionary for hypothesis rules, modeling components, signals and processes will indeed facilitate reproducibility and communication across disciplines. Application to PhysiCell was presented #SMB2023

.Paul Macklin finishes his plenary talk with a live-coding session in PhysiCell, showcasing the ease of use (and ease of learning!) the framework! #SMB2023

We're preparing a PhysiCell 1.13.0 release to go out tonight. Most importantly, it includes PhysiMeSS by Cicely Macnamara, Vincent Noël (@vincent-noel.fr on BlueSky), and collaborators as an official addon for ECM modeling. #opensource IMO

Thrilled to announce a new preprint developing a new grammar in PhysiCell to bridge biological, clinical, and systems biology researchers for mathematical modeling of biological systems at scale including integration of single-cell multi-omics data. 1/19 biorxiv.org/content/10.110…

Recently, integrating single-cell data from human pancreatic cancer tumors and organoid co-culture demonstrated a trade-off between tumor cell proliferation and fibroblast-associated EMT in epithelial cells. 6/19 doi.org/10.1101/2022.0…

Season's Greetings to everyone from PhysiCell

The Andromeda Galaxy above the canopy on Vancouver Island. Dedicating this image to those of you who stayed positive, spread light & chose love over hate this year! Keep shining into 2024 my friends! It took 2.5 million years for the light from 1 trillion stars to hit my lens

Unique opportunity to learn how to map the human body at single cell resolution! Wet labs and computational labs are welcoming students. Great cohort and networking. CNS Center IU Luddy IU Bloomington IEEE VIS

Last night I was lucky to be among the first group in New York to get to taste chicken grown from a droplet of muscle cells. It was.... DELICIOUS. Succulent, moist, the right texture. Chicken as it should be. Even though full commercialization is a way off, it made me excited

Lesson in software design

One more milestone for the #PhysiCell community: we’re thrilled to announce our latest publication in Briefings in Bioinformatics - "Building Multiscale Models with #PhysiBoSS, an Agent-Based Modeling Tool" 🧬📊 Check out the full article here: academic.oup.com/bib/article/25… (1/6)