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So I agree with this characterization that there are three kind of data scientists: analytics, algorithm, and inferential. I would say I am 50% analytics 40% algorithm and 10% inferrential. What’s your pie chart?

Just donated to Epi-BioCyclers for Cycle for Survival. So proud to be part of the community.

New manuscript with recs on how to normalize scRNA-Seq data. Main message: don't use log(CPM+1) transformation, it magnifies unwanted source of variability. For example, see tSNE plots of technical replicates below. For more see biorxiv.org/content/10.110… and thread by Will Townes.

My new academic role model. nytimes.com/2019/04/01/tec…

Our paper on genomic risk stratification in metastatic lung adenocarcinomas is now online ascopubs.org/doi/full/10.12… Gʀᴇɢᴏʀʏ Rɪᴇʟʏ David B. Solit, MD Marc Ladanyi

THREAD: (1/10) Our work in JCO PO looked at NGS data from patients with met lung adeno. Some goals: (1) explore notion of molecular staging (within stage IV) using somatic mut & (2) see what drives poorer outcomes under current standard of care ascopubs.org/doi/full/10.12… #MSKIMPACT

Resubmitting to different journals

Another packed house for today’s MSK Department of Pathology & Laboratory Medicine Special Seminar (“How Pathologists Can Learn to Stop Worrying and Love Statistics”) with @sloan_kettering’s Dr. Mithat Gönen #MSKPathology #MSKPathologyGrandRounds

Found on the web

Introducing 📦panelmap to visualize grouped data and circomap for multiple cohorts in R! github.com/arorarshi/pane… #dataviz #rstats check out an example from mtcars!

I am voting for a future that believes in science and immigrants.

25 min of smart and funny people talking about culture (including delicious food 🙂) #StopAsianHate #DailyShow youtu.be/kWi8wo74BBM

Using #genomic and #epigenomic meta-features to predict the tissue of origin of cancer from the hidden genome of #RareVariants: new #CancerResearch paper by Saptarshi Chakraborty Axel Martin Colin Begg Ronglai Shen Cancer at Nature Portfolio go.nature.com/3uqzvGo

"Excited to share our paper, now online in Cell Reports Methods. We analyzed 17M T cells from 138 PBMC samples from melanoma patients on nivo-ipi. cell.com/cell-reports-m… #SingleCell #CancerImmunotherapy #flowcytometry