Ruthie Johnson (@ruthie_johnson) 's Twitter Profile
Ruthie Johnson

@ruthie_johnson

Berkowitz Postdoctoral Fellow; Dept Biomedical Informatics, Harvard Medical School. PhD UCLA Computer Science.

ID: 457310347

linkhttp://ruthjohnson95.github.io calendar_today07-01-2012 07:58:22

1,1K Tweet

1,1K Followers

1,1K Following

Harold Pimentel (@hjpimentel) 's Twitter Profile Photo

Post review Rosace paper is out! Big thanks to the reviewers who helped us improve the benchmarks, refs, and language of the paper. DMS is a new area for us so it was especially helpful. First of many DMS papers to come! Congrats and great work, Jingyou Rao x.com/JingyouR/statu…

Sasha Gusev (@sashagusevposts) 's Twitter Profile Photo

A six feature logistic LASSO model predicts immunotherapy response better than prior Machine Learning methods. A good reminder that bigger isn't always better and treatment history matters a lot! [Chang et al. Nature Cancer nature.com/articles/s4301…]

A six feature logistic LASSO model predicts immunotherapy response better than prior Machine Learning methods. A good reminder that bigger isn't always better and treatment history matters a lot!

[Chang et al. Nature Cancer  nature.com/articles/s4301…]
AJHG (@ajhgnews) 's Twitter Profile Photo

📢New! 📰A scalable and robust variance components method reveals insights into the architecture of gene-environment interactions underlying complex traits 🧑‍🤝‍🧑Sriram Sankararaman & colleagues cell.com/ajhg/fulltext/…

AJHG (@ajhgnews) 's Twitter Profile Photo

📢Online now! 📰Splicing-specific transcriptome-wide association uncovers genetic mechanisms for #schizophrenia 🧑‍🤝‍🧑Grace Xiao Bogdan Pasaniuc & colleagues cell.com/ajhg/fulltext/…

Michelle M. Li (李敏蕊) (@_michellemli) 's Twitter Profile Photo

Introducing PINNACLE: a contextual AI model that analyzes protein interactions from 156 cell types across 24 tissues to generate about 400,000 cell type specific protein representations! Why is this important? ✨PINNACLE can adjust its model outputs based on biological context✨

Introducing PINNACLE: a contextual AI model that analyzes protein interactions from 156 cell types across 24 tissues to generate about 400,000 cell type specific protein representations!

Why is this important? ✨PINNACLE can adjust its model outputs based on biological context✨
USA Gymnastics (@usagym) 's Twitter Profile Photo

OLYMPIC BRONZE MEDALISTS! 🥉 For the first time since 2008, the U.S. Men are taking home hardware in the Olympic Team Competition! Congratulations to Asher, Paul, Brody, Stephen & Frederick - you are Olympic Medalists!

OLYMPIC BRONZE MEDALISTS! 🥉

For the first time since 2008, the U.S. Men are taking home hardware in the Olympic Team Competition! Congratulations to Asher, Paul, Brody, Stephen & Frederick - you are Olympic Medalists!
Ruthie Johnson (@ruthie_johnson) 's Twitter Profile Photo

However, those skills listed are incorrect. First skill is a triple twisting double tuck. No double Arabian in sight. Too many tumbling passes listed. Ends with a double layout. Difficulty levels are also incorrect.

AJHG (@ajhgnews) 's Twitter Profile Photo

🚨New today! 📰Genes with differential expression across ancestries are enriched in ancestry-specific disease effects likely due to gene-by-environment interactions 🧑‍🤝‍🧑Juehan Wang Nicholas Mancuso & co cell.com/ajhg/abstract/…

Yi Ding (@yi_ding_) 's Twitter Profile Photo

Human genome has 3⃣0⃣0⃣0⃣0⃣0⃣0⃣0⃣0⃣0⃣ bp, only 1⃣0⃣0⃣0⃣0⃣ are used in the figure! Chromosomes pass down variants as a group to make sure your kid is more related to you. You never know how innovative racists can be when distorting genetics for their evil propaganda. 😡

Ruthie Johnson (@ruthie_johnson) 's Twitter Profile Photo

After years of being a California pup, Oscar is excited to follow in the footsteps of his idol, Bruiser Woods, and move to Boston for his post-grad career. He’s excited to see the land of Boston terriers, but wonders why they say “bawk” instead of “bark”

After years of being a California pup, Oscar is excited to follow in the footsteps of his idol, Bruiser Woods, and move to Boston for his post-grad career. He’s excited to see the land of Boston terriers, but wonders why they say “bawk” instead of “bark”
Lorenzo Righetto (@lorenzorighett7) 's Twitter Profile Photo

A foundation model is used to rank drugs as potential indications and contraindications across 17,080 diseases, identifying therapeutic candidates even for diseases with no existing drugs Marinka Zitnik Kexin Huang Jure Leskovec Ben Glicksberg Girish Nadkarni nature.com/articles/s4159…

Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

Medicine thrives on knowledge, yet clinical vocabularies are fragmented. AI struggles to unify this knowledge, creating a gap in precision medicine. Excited to share unified clinical vocabulary embeddings, a project led by stellar Ruthie Johnson Half of healthcare foundation AI

Medicine thrives on knowledge, yet clinical vocabularies are fragmented. AI struggles to unify this knowledge, creating a gap in precision medicine. Excited to share unified clinical vocabulary embeddings, a project led by stellar <a href="/ruthie_johnson/">Ruthie Johnson</a>

Half of healthcare foundation AI
Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

(1/4) Excited to introduce ProCyon: a multimodal foundation model to model, generate, and predict protein phenotypes, led by stellar Owen Queen Yepeng Robert Calef Valentina Giunchiglia 👉 biorxiv.org/content/10.110… ProCyon is an 11B parameter multimodal model that integrates protein

(1/4) Excited to introduce ProCyon: a multimodal foundation model to model, generate, and predict protein phenotypes, led by stellar <a href="/oq_35/">Owen Queen</a> <a href="/YepHuang/">Yepeng</a> Robert Calef <a href="/valegiunca/">Valentina Giunchiglia</a>

👉 biorxiv.org/content/10.110…

ProCyon is an 11B parameter multimodal model that integrates protein
LOGML Summer School (@logmlschool) 's Twitter Profile Photo

🌟Applications open- LOGML 2025🌟 👥Mentor-led projects, expert talks, tutorials, socials, and a networking night ✍️Application form: logml.ai 📅Apply by 6th April 2025 ✉️Questions? [email protected] #MachineLearning #SummerSchool #LOGML #Geometry

Ada Fang (@adafang_) 's Twitter Profile Photo

Introducing ATOMICA 💫 A model to universally represent molecular interactions (for proteins, nucleic acids, small molecules, and ions) at an all-atom scale 🧵

Introducing ATOMICA 💫 

A model to universally represent molecular interactions (for proteins, nucleic acids, small molecules, and ions) at an all-atom scale 🧵
Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

📢 🧬 New preprint! Can we predict which cancer patients will benefit, before treatment begins? Wan Xiang Shen Immunotherapy saves lives but many patients don’t respond to treatment, and we still lack reliable tools to predict who will benefit We introduce COMPASS, foundation

📢 🧬 New preprint!
Can we predict which cancer patients will benefit, before treatment begins? <a href="/WanXiang_Shen/">Wan Xiang Shen</a>

Immunotherapy saves lives but many patients don’t respond to treatment, and we still lack reliable tools to predict who will benefit

We introduce COMPASS, foundation
euan ashley (@euanashley) 's Twitter Profile Photo

Atul Butte died yesterday. The world lost a giant. A big bear of a man. With a huge smile. With love for everyone. With energy that could power a room. I loved everything about Atul. I loved how he was always happy. I loved how excited he was about science and helping people.

Atul Butte died yesterday.
The world lost a giant.
A big bear of a man.
With a huge smile.
With love for everyone.
With energy that could power a room.
I loved everything about Atul.
I loved how he was always happy.
I loved how excited he was about science and helping people.