🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

MLCB2024 abstract/paper submission deadline is coming up (June 15). mlcb.github.io Also check out the list of fantastic keynote speakers: Maria Chikina (Maria Chikina), Ava Amini (Ava Amini), Jian Zhou (Jian Zhou), Nilah Ioannidis, Sergey Ovchinnikov (Sergey Ovchinnikov)

#MLCB2024 deadline extended to June 17!!

Our commentary (with Alex Sasse @LXandR_ and Maria Chikina Maria Chikina ) on past and future of sequence-to-function deep genomics models is online Nature Methods : nature.com/articles/s4159… Along with many thoughtful Comment Articles online today: nature.com/nmeth/articles…

We are accepting submissions for the AI for New Drug Modalities workshop at #NeurIPS 2024! Workshop website: sites.google.com/view/newmodali… Submission deadline: October 1st 2024

Four last days to register! Symposium on 9/9. We have a great lineup of speakers, plenty of time to network and registration is free. genotech.ucsf.edu/home

#MLCB2024 will be streamed live from YouTube this week (Thursday and Friday). Get the link from here: mlcb.github.io

#MLCB2024 kicks off in 22h (9am PST) with keynote from Jian Zhou on DL for transcriptional initiation! Full schedule at mlcb.github.io and public livestream at youtube.com/live/reqWvNOKl…. Please RT!

#MLCB2024 is live at youtube.com/live/GflTIcI5i… ! First up Jian Zhou on interpretable DL for transcription initiation.

Great work by Maria Chikina

Taking sequence-based modeling to the next level: 500 kb DNA input, single-cell resolution, joint ATAC & RNA coverage tracks. Thumbs up to Johannes Johannes Hingerl & Laura Laura Martens (@lauradmartens.bsky.social). Wonderful collab with Jason Buenrostro & Fabian Theis. Open source, of course. Enjoy!

Honoured to have written this review with Jernej Ule’s lab on the splicing code, spanning modeling, mechanisms and its implication for therapeutics designs. Wonderful teamwork.

The talks in this year's #MLCB2024 series were absolutely spectacular, especially the keynotes. Don't miss watching them! 1/

A community effort to optimize sequence-based deep learning models of gene regulation go.nature.com/3NnblYZ

Our work benchmarking proportion estimation methods (genomebiology.biomedcentral.com/articles/10.11…) finds BayesPrism (nature.com/articles/s4301…) among the top performers. We introduce a fast re-implementation InstaPrism: same accuracy, orders of magnitude faster! academic.oup.com/bioinformatics…

Information leakage due to homology: A pervasive and non-trivial issue in bioinformatics. Excited to hear about Abdul Muntakim Rafi's insights and recommendations for sequence-based modeling on Wednesday at the Kipoi seminar.

🧬 Genomic DNNs can be trained to learn a lot of different aspects of gene regulation, but they're not perfect and we don't know which predictions are reliable and which ones aren't. We introduce DEGU: Uncertainty-aware Genomic Deep Learning with Knowledge Distillation. 1/n

Its (paid) intern time again! Come join us in South San Francisco to explore a summer of ML, regulatory biology and human genetics: roche.wd3.myworkdayjobs.com/ROG-A2O-GENE/j… gokcen Avantika Lal

[SAVE THE DATE] MLCB 2025 is happening Sep 10-11 at the NY Genome Center—NYC! Attend the premier conference at the intersection of ML & Bio, share your research and make lasting connections! Submission deadline: Jun 1 Details: mlcb.github.io Spread the word—please RT!