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Albert Cardona @[email protected] Davi Bock Ben Pedigo Dan Bumbarger Kording Lab 🦖 Adam Marblestone Tony Zador Dániel Barabási NeuroData Lab Yann LeCun Wei-Chung Allen Lee @darbly.bsky.social @csdashm Marc Viren Jain John W. Krakauer Ida Momennejad Alexander Bates Greg Jefferis Adrienne Fairhall Justus CATMAID We are hosting many datasets on webknossos.org openly available - can browse on most mobile phones. Eg webknossos.org/datasets/Demo_… #webknossos scalable minds

New publication data on webknossos.org: "Electron Microscopic Reconstruction of Neural Circuitry in the Cochlea" (Cell Reports) by Hua et al. Published at Cell Reports! Check it out now: wklink.org/9870

New publication with 10 novel datasets available on webknossos.org: "Postnatal connectomic development of inhibition in mouse barrel cortex" Published in Science Magazine by Anjali Gour, Kevin M Boergens, N Heike, Y Hua, P Laserstein, K Song, Moritz Helmstaedter

We're introducing a pilot program for webKnossos. Receive up to 10TB of storage for free and help us shape the future of webKnossos. Apply now at webknossos.org/pilot-program

webKnossos now supports multisection tiffs and image sequences on upload. 🎉 Let us know what formats we should add next!

Read about new annotation and usability features in webKnossos in our latest blog post! medium.com/scalableminds/…

webknossos.org now features a site listing publications which used webKnossos in their work. Please contact us if we missed your publication! webknossos.org/references

We're introducing a dark mode to webKnossos! 🌙 Take it easy on your eyes when working those late hours or in dark environments or simply enjoy its aesthetic.

webKnossos now supports precomputed meshes. Click on a segment and instantly view the object in 3D. Try a demo: webknossos.org/datasets/scala…

Read Norman Rzepka 🇺🇦 's blogpost to learn everything you need about meshes in webKnossos! medium.com/scalableminds/…

Render your meshes with your favorite tool. Choose a loaded mesh in the "Meshes" tab, then download it in STL. Import it into your rendering software (such as Blender or Amira) and let your graphic skills shine! Read more: medium.com/scalableminds/…

Do you need ground truth for your deep learning project? Check out our manual annotation service. Get high-quality annotations from our trained annotators for your image data. Learn more: webknossos.org/services/annot…

Read our blogpost about Machine learning workflows for large-scale reconstruction projects and discover how to make the most out of webKnossos for such use cases! medium.com/scalableminds/… #MachineLearning #Connectome

There are now (at least) 4 companies offering neural circuit reconstruction as a service: Zetta AI, Ariadne AI, Scalable Minds, and Unidesign Solutions. I think all require you to bring your own EM data, but I'm sure we'll see sample prep and image acquisition as a service soon.

Find a soma, select the skeleton annotation tool, move between the slices of your data and place nodes until your neurite ends... Learn everything about skeleton annotations in webKnossos in Tom Herold 's blog post! medium.com/scalableminds/… #Connectome #BioImageAnalysis

Going to present speedup steps that made data analysis code 700% faster, today at 2PM, #PyConDE 2022.pycon.de/program/VYS8XY Big thanks to my amazing colleagues at scalable minds for the help and feedback preparing it 🙏

PyConDE & PyData was awsome! Big thanks to all the amazing organisers, volunteers & speakers! #PyConDE #PyDataBerlin

Major publication by our friends at Moritz Helmstaedter MPI for Brain Research! We used our Voxelytics software to help with fully automatic neuron segmentation, synapse detection, and connectome generation for 9 EM datasets from Mouse, Macaque, and Human. All datasets are available at WEBKNOSSOS.

Storing, sharing, visualizing and processing large #volumeEM data can be challenging. Selecting the right file format is the basis for making things easier. Our article „Toward scalable reuse of vEM data: OME-Zarr to the rescue“ is out now: authors.elsevier.com/a/1gjIc,25QIop… 🧵1/5