Sam Abbott (@seabbs@fosstodon.org) (@seabbs) 's Twitter Profile
Sam Abbott (@[email protected])

@seabbs

Real-time infectious disease modelling. Developing methods for outbreak response, surveillance, and pandemic preparedness. fosstodon.org/@seabbs

ID: 3900399077

linkhttp://samabbott.co.uk calendar_today08-10-2015 14:55:16

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Spencer J. Fox (@foxandtheflu) 's Twitter Profile Photo

Reminder I’m still looking for a postdoc to join the Fox lab! Starting to review applicants this and next week, but email me if you are interested and can’t get to the application in time.

Sam Abbott (@seabbs@fosstodon.org) (@seabbs) 's Twitter Profile Photo

I can't think of a better PhD supervisor. Lots of impactful work backed up with solid theory from Bracher et al. The interface between nowcasting and forecasting contains lots of interesting untapped ideas and unlike many parts of IDD a lot of the work is tractable.

Sam Abbott (@seabbs@fosstodon.org) (@seabbs) 's Twitter Profile Photo

Okay, I hear you Sam being Bayesian is cool but what if like I just don't want to be right now? primarycensored.epinowcast.org/articles/fitti… (fit primary censored and truncated distributions using fitdistrplus)

Nikos Bosse (@nikosbosse) 's Twitter Profile Photo

Happy to share that we FINALLY published version 2.0.0 of scoringutils on CRAN. scoringutils is an R package designed to facilitate the evaluation of forecasts. It operates on data.table, is very slick and has a lot of visualisations and extra features. epiforecasts.io/scoringutils/

Happy to share that we FINALLY published version 2.0.0 of scoringutils on CRAN. 

scoringutils is an R package designed to facilitate the evaluation of forecasts. It operates on data.table, is very slick and has a lot of visualisations and extra features. 
epiforecasts.io/scoringutils/
Sam Abbott (@seabbs@fosstodon.org) (@seabbs) 's Twitter Profile Photo

primarycensored #rstats 📦 is now on CRAN and stable. primarycensored.epinowcast.org If you want to use or estimate delay (think incubation periods, reporting delays, etc.) distributions in epi it might be worth checking out. A #julia version is in development.

Epinowcast (@epinowcast) 's Twitter Profile Photo

Seminar today at 3pm UK time with Matthew Shin talking about: Quantifying regularity of COVID-19 epidemic waves in France to assess predictability of future waves and improve forecasting epinowcast.org/seminars/2024-…

Epinowcast (@epinowcast) 's Twitter Profile Photo

For this weeks #epinowcast seminar (Weds at 3pm UK time (10 am ET)) we have @foxandtheflu.bsky.social talking about Optimizing disease outbreak forecast ensembles and the use of microHubs epinowcast.org/seminars/2024-…