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We were very privileged to host the Honourable Prime Minister Shri Narendra Modi at IISc today. He inaugurated the Centre for Brain Research and laid the foundation stone for the upcoming Bagchi-Parthasarathy Hospital on campus. PMO India Ministry of Education

Introducing GEMLI: Barcode-free prediction of cell lineages from scRNA-seq, by very talented Almut Eisele + a great collaboration with @MTarbier and Vicent Pelechano EPFL #Bioinformatics #scRNA #devbio #singlecell biorxiv.org/content/10.110… 🧵

Confused by all the "what is epigenetics" discourse? Well I have just the thing for you -- presenting the Epigenetics Alignment Chart!

Happy to share our preprint led by Srinath Muralidharan Manas Sehgal soundharya ramu Susmita Mandal (she/her) on correlation of PD-L1 activity with partial EMT & glycolysis across carcinomas. Also, PD-L1 & glycolysis levels together drive worse patient outcomes than PD-L1 alone. biorxiv.org/content/10.110…

#NobelPrize2022 winners Carolyn Bertozzi and #SvantePaabo are openly #LGBTQ scientists. Both exemplify that being openly queer and achieving career success is possible. They offer yet another proof that queer people can not only contribute positively to society but also excel

My dear Biologist colleague, solely stating that “Statistical analysis were done in R” is NOT a sufficient description of the bioinformatics Methods of your paper, as just saying “experiments were performed in a lab” would not be of the experimental Material and Methods

Our single-cell NSCLC atlas is now published: doi.org/jk3v We collected 1.3M cells from 29 datasets (including our own) and put a particular emphasis on Neutrophils which are hard to profile on some platforms. (1/4)

A gamechanger move for STEM in India

Happy to have contributed, together with Susmita Mandal (she/her) @BSSE_IISc, in this clinical study led by Ujjaini Dasgupta Avinash Bajaj to identify sphingolipid signature to distinguish between luminal vs. triple negative breast cancer in Indian cohort, published in International Journal of Cancer. Wiley in research

NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity genomebiology.biomedcentral.com/articles/10.11…

'Single-cell multi-omics and lineage tracing to dissect cell fate decision-making' cell.com/stem-cell-repo…

We feel it important to tweet this graphics & post from Adam Morris' LinkedIn as it helps people to identify toxic working environments and behaviour. With Researcher Mental Health Observatory COST Action we are working on improving working culture in #academia & #AcademicMentalHealth. #remoambassadors COST

People think Machine learning can solve all the biology problems. In reality, see the MEME. That said, ML is very powerful when used correctly. 8 papers to avoid ML pitfalls in biology👇 🧵

There was little online material to learn bioinformatics 10 years ago when I started. I curated ten resources to learn bioinformatics for FREE 🧵👇

webR v0.1.0 has just been released! I'm super excited to see what people create by using webR in their own projects 😃. The docs are at docs.r-wasm.org and I've written an introductory blog post talking more about the kind of things webR can do at tidyverse.org/blog/2023/03/w….

Curious about the 3D genome’s relationship with gene expression? With @ychen48184593 and team at DONG XING‘s lab, we’ve developed a method to simultaneously capture 3D genome and RNA in single cells. Find our study in the latest Science Magazine! doi.org/10.1126/scienc… (1/8)

Congrats to Steffen Fuchs and the team on their work on how MYCN suppresses circular RNAs in neuroblastoma out today Nature Communications 👏🏻👏🏻 nature.com/articles/s4146…

Single-nucleotide variant calling in single-cell sequencing data with Monopogen nature.com/articles/s4158…

We celebrate the end of our three-day 🚀hackathon🚀 on spatial omics tools and methods in #Ghent #Belgium. A big thanks to all of the researchers across Europe. Check out our final slide deck and code! docs.google.com/presentation/d… github.com/saeyslab/VIB_H… #SpatialOmics24