🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

Integrating single-cell & spatial omics with different resolutions is key to understand tissue structure & function 🧬🔬 We had tackled this using multi-objective optimization - we just updated our paper and implemented an #rstats package arxiv.org/abs/2301.01682

Amazing work by @DanielBDimitrov extending LIANA to now include also CCC approaches aimed at spatial data. I’m happy that i was able to help by showcasing MISTy. Huge thanks to Philipp Schäfer for the adaptation, bringing MISTy to the Python leaning part of our community.

We have great scientific sessions lined up this year including "Artificial Intelligence / Machine Learning: Data Integration and Analytics for Biomolecular Imaging." We're thrilled to have speakers including Jovan Tanevski (Heidelberg University),

We welcome Julio Saez-Rodriguez Julio Saez-Rodriguez as our new Head of Research! Associate Director for EMBL-EBI Services Jo McEntyre Jo McEntyre has been promoted to Deputy Director of EMBL-EBI & Rolf Apweiler is stepping back to Associate Director as he looks towards retirement.

🚨 We are looking for a PhD student 🚨 to join the Tanevski Lab and Denis Lab at the Heidelberg University Hospital, working at the intersection of machine learning and spatial omics as part of the Translational Spatial Profiling Center. Please RT karriere.klinikum.uni-heidelberg.de/index.php?ac=j…

Our workflow, FLOP, exploring the impact of filtering, normalization, and differential expression on functional analysis is now published in Nucleic Acids Res. doi.org/10.1093/nar/gk…

Tomorrow at BioQuant : Dissecting and overcoming different shades of cancer immune evasion by Benjamin Izar. Join us! Supported by Health + Life Science Alliance Heidelberg Mannheim Hosted by: Denis , Julio Saez-Rodriguez and Jovan Tanevski Organised by MULTI-SPACE bioquant.uni-heidelberg.de/events/f0a61afc

📣 The much-revised manuscript of LIANA+, our all-in-one solution to study cell-cell communication from single-cell, spatial, and multi-omics technologies, is now published in Nature Cell Biology nature.com/articles/s4155…

Together with Jovan Tanevski and Johannes Betge, we are looking for a computational postdoc interested in the combination of modeling tissue organization patterns from spatial proteomics data in a highly clinically relevant cancer context. Funding available: health-life-sciences.de/opportunities/…

The latest version of Kasumi is now published in Nature Comms nature.com/articles/s4146… Kasumi identifies patterns in tissue patches enabling analysis of disease progression and treatment response while providing insights into spatial coordination at cell-type or marker level