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Use our new dark mode to visually highlight your data! 🌙

I'm excited to speak about WEBKNOSSOS at the Partnership for Structural Biology symposium later today! Learn how webKnossos facilitates large-scale automated reconstruction projects. #PSBSymp21

Happy to see our own Norman Rzepka 🇺🇦 present WEBKNOSSOS today at the Partnership for Structural Biology symposium today. Checkout webknossos.org if you can't make it today and learn how wK accelerates #neuroscience workflows.

Render your meshes with your favorite tool. Choose a loaded mesh in the "Meshes" tab, then download it in STL. Import it into your rendering software (such as Blender or Amira) and let your graphic skills shine! Read more: medium.com/scalableminds/…

Meet us at our first webKnossos office hours to learn more about 3D meshes and do a community Q&A. Monday August 2nd @ 10AM and 5PM.

Did you ever wonder which steps lead to a full neuron reconstruction? In his blog post, Tom Herold explains everything from the alignment of the raw data to the connectome generation. medium.com/scalableminds/… #Connectomics #ImageAnalysis

#CBIAS2021 finally starts today! I'm excited to be presenting a poster about WEBKNOSSOS (poster hall 2, poster no. 37).

Today at 2pm! Tom Herold from scalable minds will give an interactive walkthrough through the main features and applications of webKnossos. #TechExchange #imagedata #datasharing eurobioimaging-industryboard.com/tech-exchange-…

What makes us human, at the neuronal network level? We discovered a dramatic (10-fold) expansion of interneuron-to-interneuron networks in the human brain compared to mouse: just published in Science Magazine MPI for Brain Research Max Planck Society science.org/doi/10.1126/sc…

Coming soon ✨! Watershed feature You know how long it lasts to brush a cell and not go beyond its membrane… Well, this is over! With the new intensity-based seeded watershed tool in webKnossos, all you have to do is to box select a cell - and webKnossos will fill it for you.

🐣 New feature 🐣 From now on, you can change and set the color of a segment ID. Make your cells blue, pink… even black or white! This can be really useful, for example, if the random colors of your segmentation make it hard to differentiate cells.

This is a kiwi fruit. Reconstructed in 3D from serial block-face electron microscopy (sort of). Check out the 3D dataset! wkl.ink/9234

Let's reconstruct some more fruits in 3D: we present to you a FIG acquired with array tomography and a TOMATO acquired with SBEM. Enjoy! Links to the datasets: wkl.ink/9112 wkl.ink/8913

I am really proud of the WEBKNOSSOS team for the awesome and playful rebranding. Thanks to everybody for chipping in. Let's continue to build great tools for the next generation of scientists!

I am excited to showcase WEBKNOSSOS at the NEUBIAS symposium today.

Exciting news! ✨🐣 We just released a new AI-based quick segment feature in WEBKNOSSOS! The new feature is powered by @MetaAI's Segment Anything Model. Simply draw a bounding box to automatically segment complex objects. 🚀 Try it now on webknossos.org for free!

New feature 🐣 4D datasets for time series! You can now not only view your data in 3D but also in 4D, adding the element of time. It works for visualization as well as for annotation. Any feedback is welcome!! Try it out on this dataset: webknossos.org/links/EJOEaHFF…

🎉 To celebrate ZEP2's approval, we baked up something special! Thanks to all for making this milestone possible! zarr_dev 🍰

Jordão Bragantini Chan Zuckerberg Biohub Network Python Software Foundation Martin Weigert (maweigert.bsky.social) EPFL Our first tech bite: WEBKNOSSOS: AI-assisted, collaborative annotation and sharing of large 3D images by Norman Rzepka - Scaleable Minds scalable minds #dataAnalysis #science

Check out our complete workflow video for imaging facilities 🎥 ! Upload, align, analyze, and share your vEM data with WEBKNOSSOS. Get started for free at webknossos.org!