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A new review "Addressing antibiotic resistance: computational answers to a biological problem?" with Anna Behling justin M. O'Sullivan Brooke Wilson Marko Virta and Daniel Ho. Possibilities to guide antibiotic stewardship and future clinical decision-making by AI sciencedirect.com/science/articl…

New workflow developed by Tommi Vatanen and colleagues to assemble and annotate #microbial #genomes that combines deep-learning functional predictions with commonly used orthology-based annotations: journals.asm.org/doi/10.1128/ms… Broad Institute Dept. of Molecular Biology, MGH @MGH_RI

Functional effects of human milk oligosaccharides (HMOs) Ener Çağrı Dinleyici Yvan Vandenplas, MD, PhD tandfonline.com/doi/full/10.10…

Our collaboration with Yingfei Ma's group on gut phage culturomics is published in Cell Host&Microbe! The Gut Phage Isolates Collection (GPIC) expands the diversity of cultured gut phages and provides a valuable resource for human microbiome engineering. cell.com/cell-host-micr…

Two papers building on the protein sequence➡️structure➡️function idea are out! In the first one, (nature.com/articles/s4146…) we explore the complex relationships between the three finding many surprising examples and >100 novel protein folds. [1/4]

New paper from our team (pre-proof): Impact of exposure to #PFAS on fecal microbiota composition in mother-infant dyads sciencedirect.com/science/articl… #gutmicrobiome #exposome

#MVIF #19 is LIVE in 1 hour! You can still register hopin.com/events/microbi… Your Atlantic #MVIF hosts will be Serena Manara @cpavloud Michael Neugent PhD Tommi Vatanen Francesco Asnicar Svetlana Ugarčina Perović

Phanta manuscript is out today. If you are interested in profiling human gut viruses, check Phanta. nature.com/articles/s4158… github.com/bhattlab/phanta Meena Chakraborty

For #WorldDigestiveHealthDay, we highlight Seppo Meri’s recommendation of this paper by Tommi Vatanen et al. in Cell Press that gives insights into the development of maternal & infant microbiomes/metabolomes during late pregnancy & early life. #WDHD2023 facultyopinions.com/article/742467…

One more week to apply. We are looking for talented individuals with PhD and experience in #NeuralNetworks and large language models. Join our growing team!

We are recruiting! We are looking for talented scientists to join our team as part of our #ERC grant 'VESICULOME'. Interested in doing a PhD or a postdoc with us to work on the human gut microbiome and its bacterial vesicles? Consider applying asap! Please RT. 1/3

One more week to apply to the Nordic Summer School on Computational Microbiome Research. Microbiome (and other relevant) researchers: please share with your network.

Results from the multicentre INNODIA T1D study: Faecal Feacalibacterium prausnitzii abundance inversely correlated with HbA1c levels at diagnosis in newly diagnosed individuals. Tommi Vatanen INNODIA University of Helsinki Medicine and Health, University of Helsinki HiLIFE_Helsinki tinyurl.com/3mxtyyh6 🔓

🎓📚Any recommendations for MSc level (microbiome) bioinformatics textbooks? Both online and physical books welcome! We are looking to expand our self-study reading list for our MSc students and also looking to implement self-study exams based on selected books.