🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

The first #MVIF of the new year is in 1⃣week!🥳 ⭐️Keynote talk by Bork Group at EMBL Heidelberg moved to BlueSky Selected talks by ⭐️Changzhi Wang ⭐️Henrik M. Roager ⭐️Kenyum Bagra ⭐️Nitzan Soffer This event is proudly supported by Illumina🙌 Join Gather to discuss their latest technologies! Register shorturl.at/GMPS8

"The person-to-person transmission landscape of the gut and oral microbiomes". Our work on microbiome stransmission published today open-access in nature! Fantastic work Mireia Valles-Colomer, the whole Segata Lab group CIBIO - UniTrento and all the collaborators! nature.com/articles/s4158…

Microbiota-induced active translocation of peptidoglycan across the intestinal barrier dictates its within-host dissemination pnas.org/doi/10.1073/pn…

gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota | Nature Biotechnology nature.com/articles/s4158…

MetaPhlAn 4 is published today OA in Nature Biotechnology Nature Biotechnology nature.com/articles/s4158… We added GTDB output, improved performance and comparative analyses w.r.t. the preprint version. Huge thanks to Aitor Blanco Miguez for the eroic effort and to all Nicola Segata and hutlab

Pipeline release! nf-core/ampliseq v2.5.0 (Amplicon sequencing analysis workflow using DADA2 and QIIME2) See the changelog: github.com/nf-core/amplis…

Our review paper "Cardiometabolic health, diet and the gut microbiome: a meta-omics perspective" today in Nature Medicine Nature Medicine nature.com/articles/s4159… Had fun writing it with such great team Mireia Valles-Colomer Cristina Menni Sarah Berry Ana Valdes Tim Spector MD (Prof) Nicola Segata

We are excited to release Seurat v5- with new methods for multimodal, spatially resolved, and massively scalable single-cell analysis. satijalab.org/seurat

We are thrilled that our Spokesperson Stefan Schreiber Universitätsklinikum Schleswig-Holstein Universität Kiel CAU 🎓 is No 1 of the Medical Scientists in Germany in the new Ranking of Research.com 🥳precisionmedicine.de/en/details/new… #precisionmedicine #inflammation

👋 Adiós #barbarplots, Hola raincloud plots😎 👉 ggdist Cédric Scherer buff.ly/3yjlVXB 🤟 ggstatsplot Indrajeet Patil (इंद्रजीत पाटील) buff.ly/303zAQY 🖖 pirateplot Nathaniel D Phillips buff.ly/3N5h8jL #dataviz #RStats #datavisualization #analytics #datascience #stats #data #BigData

At the international symposium of miTarget yesterday around 100 participants discussed and exchanged about the role of the #microbiome in #IBD. #miTargetKiel #precisionmedicine #inflammation Universität Kiel CAU 🎓 Universitätsklinikum Schleswig-Holstein precisionmedicine.de/en/details/new…

Reminder: if you ever want to learn how to use git and GitHub in R, Jenny Bryan has the BEST resource: happygitwithr.com/index.html. Even though I use Azure DevOps at work, I've still found it helpful. Just did some stuff in the terminal that WORKED!

Gwendolyn Gusak presents three new strain-specific genome-scale metabolic models of 𝘚𝘵𝘢𝘱𝘩𝘺𝘭𝘰𝘤𝘰𝘤𝘤𝘶𝘴 𝘩𝘢𝘦𝘮𝘰𝘭𝘺𝘵𝘪𝘤𝘶𝘴 at this year’s #Bioinformatics and #MedicalInformatics Day #TüBMI 2023 of Universität Tübingen. Her work was a use case of the software tool refineGEMs.

You can make an entire figure in R using the patchwork package. A tutorial is available at my GitHub to generate this exact figure (github.com/cxli233/Online…). It covers controlling layout, relative heights/widths of panels, hierarchical assembly, and position of letter labels.

"Early-life differences in the #GutMicrobiota composition and functionality of infants at elevated likelihood of developing #Autism spectrum disorder" - the newest research by Rochellys Heijtz and team! Can't wait to read it! 🙌 nature.com/articles/s4139…

Analysis of 54,000+ genomes suggests that the ancestral species of all bacteria carefully maintained most of the essential biological functions observed across its modern descendants. bit.ly/3KAufuJ UCSD Engineering @NIAIDFunding

And it's out "The maternal gut microbiome in pregnancy: implications for the developing immune system". Thank you for a fun writing experience MCarmen Collado Konnikova lab Dr. Indira Mysorekar Petter Brodin Nature Reviews Gastroenterology & Hepatology Bar- Ilan Faculty of Medicine nature.com/articles/s4157…

Specific gut microbiome profiles could offer potential benefits for patients with IBD. New findings in Gastroenterology reveal the gut microbiota in IBD has increased Enterobacteriaceae as well as metabolites such as carnitine and acylcarnitines: cmghjournal.org/article/S2352-…

Nice new paper in nature on interactions between genetic variation in host and microbiota nature.com/articles/s4158…