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I am thrilled to present mm2-fast: an accelerated version of Minimap2 that achieves up to 3.5x speedup on CPUs while maintaining identical output. Code: github.com/lh3/minimap2/t… #genomics #longreads #Minimap2 #HPC Saurabh Kalikar Chirag Jain Mohd Vasimuddin Heng Li

Graph Neural Networks power inference on data described by graph structures. Check out our lab showing the impressive GNN training performance on Intel Xeon: linkedin.com/posts/sasikant… Sasi Avnacha, Sanchit Misra (I am hiring) Mohd Vasimuddin Ramanarayan Mohanty @IntelAIResearch Pradeep Dubey

Super excited to share that we have accelerated SCANPY based single cell genomics workflow for analyzing 1.3 M mouse brain cells by ~50x on a single Sapphire Rapids CPU to finish in ~6 mins (~2x faster than a single A100 GPU) #IAmIntel youtube.com/watch?v=4Oolbq…

WooHoooo !!! Congratulations Sanchit Misra (I am hiring) Chirag Jain Mohd Vasimuddin Heng Li; And this is just a start to our journey of bringing power of Intel Xeon & computing to usher in an era of Digital Biology and enrich billions of lives #iamIntel

We are hiring motivated researchers at our India branch of Parallel Computing Labs, Intel, for our digital biology research program. DM or email me if interested. #HPC #Digitalbiology #ComputationalBiology #MachineLearning #ParallelComputing #DataManagement #IAmIntel #Intel

Pre-release of mm2-fast - our accelerated version of minimap2 - is out! Compatible with minimap2 v2.22. Working on another release that would be compatible with latest minimap2 version (v2.24). #genomics #longreads #Minimap2 #HPC Saurabh Kalikar Chirag Jain Mohd Vasimuddin Heng Li

Accelerating Genomics Pipelines Using Intel’s Open Omics Acceleration Framework on AWS aws.amazon.com/blogs/hpc/acce… via Amazon Web Services

bwa-mem2 seeding accelerated using machine learning.

mm2-fast: accelerated version of minimap2 that is up to 1.8x faster. #minimap2 #Genomics #longreads #HPC #iamintel Heng Li Chirag Jain Mohd Vasimuddin Saurabh Kalikar

Excited to share DistGNN-MB - our work on distributed large-scale mini-batch based GNN training on x86.

Excited to release mm2-fast-v1.0, the first production ready version compatible with latest minimap2 v2.24 github.com/bwa-mem2/mm2-f… Sanchit Misra (I am hiring) Mohd Vasimuddin Heng Li Chirag Jain #minimap2 #longreads #HPC #genomics

1980's construction worker Albert Stalk didn't mess about.. 😮 WOW

Happy to announce this event! Join us to hear latest research trends on various topics of computational and systems biology

Super excited to report that our accelerated version of AlphaFold2 inference based end-to-end pipeline for protein folding delivers industry-leading performance, folding a set of 77 proteins (<1K in length) in less than 200mins on a dual socket CPU platform.

I am elated to share that our accelerated version of Google’s DeepVariant based short read germline variant calling pipeline achieves leadership performance, processing the standard HG001 WGX 30x dataset in just 15 mins using 8 CPU sockets and just 3 mins using 64 CPU sockets.

It gives me great pleasure to announce that we have released 2.0 version of Open Omics Acceleration Framework with best-in-class performance/cost for 4 pipelines. Open Omics Acceleration Framework is our open sourced data science & AI framework for accelerating digital biology.

Happy to report new version of our LISA paper that uses learned-indexes to accelerate DNA sequence search on CPU. Key addition is speedup of seeding phase of BWA-MEM2 by up to 4.7x. 1/n biorxiv.org/content/10.110…… Saurabh Kalikar Mohd Vasimuddin Nesime Tatbul Tim Kraska Heng Li #genomics

Hey Flipkart, what happened! can't even install one AC. It's been 5 days since the product arrived, but your people are fooling around and not helping with the installation.

Thoroughly enjoyable collaboration with the brilliant scientist and long time collaborator Chirag Jain #genomics

Thrilled to share new version of Open Omics Acceleration Framework. Open Omics is envisioned as our performant and productive platform for digital biology including genomics, transcriptomics, proteomics, molecular docking, simulation, etc. github.com/IntelLabs/Open… 1/n