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❣️I am looking for a motivated PhD candidate to join me in creating new methods for unraveling cancer evolution Chalmers University of Technology❣️ Exciting research (if I may say so), great work atmosphere and superb employment benefits❗️ Find out more and spread the word: chalmers.se/en/about-chalm…

We’ve been busy in the lab and I’ve been totally slacking on this platform! No pictures from AACR in SD which was AMAZING and now I’m in DC for Digestive Disease Week - come hear my talk on math models in GI screening at 9:15am! Looking forward to the week #mathonco

Love seeing math equations for transformers and more in the AI in GI oncology session 🤓#DDW2024 Dennis Shung

That’s a wrap #DDW2024! Inspired and reinvigorated from talks by friends and ideas with GI colleagues. Even snuck in a visit to da Vinci’s Ginevra de’ Benci while in DC ✌️

Check out our new preprint showing aneuploidy predicts CRC in IBD-LGD, validated in multicenter cohorts. This was a large team effort and I’m excited to share with you all! medrxiv.org/content/10.110…

New online! Digital twins are integral to personalizing medicine and improving public health go.nature.com/3zSnRwv

Our article on digital twins is online today in Nature Reviews Gastroenterology & Hepatology led by PhD student Brian Johnson! We highlight the broad opportunities for implementing math models and data in the clinic. #mathonco Full text access here: rdcu.be/dWttB nature.com/articles/s4157…

Hi Rady Children's Hospital-San Diego! Is there a timeframe for the gift shop reopening? How can we all help make this happen, if help is needed? It means a lot to our kiddos who are regulars and there is nothing else within walking distance. 🩷

Highly recommend applying for this for early stage investigators in GI research! American Gastroenterological Association (AGA) has been amazingly supportive of awardees of various training backgrounds and foster a growing network of junior scientists

I’m more on Bluesky these days but wanted to share here too! PhD student Brian Johnson led our new preprint up on using LLMs for extracting diagnoses in large EHR data - extremely accurate + generalizable for (pre)cancer Dx medrxiv.org/content/10.110…

How do microbial communities assemble during precancer & cancer evolution? Excited to share our new preprint on modeling of microbial evolution in Barrett's esophagus and esophageal adenocarcinoma! 🦠 Led by PhD student Caitlin Guccione biorxiv.org/content/10.110… #barretts #mathonco

Our work on filtering host DNA from WGS data now out in Nature Communications! Congrats to first authors Caitlin Guccione and Lucas Patel Knight Lab - their methods are freely available to use on your own data 🧬 nature.com/articles/s4146…

Four years ago I wrote my inaugural poem The Hill We Climb. Both when I wrote it and performed it, I did so while continuously reflecting on Dr. Martin Luther King Jr and Coretta Scott King’s legacy. I was (and am) blown away by how my words reverberated around the world; if

Incomplete human reference genomes can skew sex bias & risk patient privacy in metagenomic data. 💡 Dr. Kathleen Curtius (Kit Curtius) & Dr. Rob Knight of MCC highlight its impact on microbiome-cancer research in Nature Communications: bit.ly/3PVfHIf.

Fantastic to see #GUTInTheNews over the last few days regarding the paper by Al-Bakir and Kit Curtius et al entitled "Low-coverage whole genome sequencing of low-grade dysplasia strongly predicts advanced neoplasia risk in UC" via bit.ly/4glrg67 Also found on the

Apply to our Evo Bio and Eco of Cancer course at Wellcome Genome Campus, UK! It's a great opportunity for trainees and a lot of fun with fabulous teachers. Hope to meet some of your early career folks there in July IMO

Our DBMI Division at UCSD is also hiring postdocs on our T15 too! Find info to apply below UC San Diego Health UC San Diego Health Moores Cancer Center Opportunities to work in our lab and others, as well as to grow your skills in our strong training program

#GUTImages from the paper by Al Bakir et al on "Low-coverage whole genome sequencing of low-grade dysplasia strongly predicts advanced neoplasia risk in ulcerative colitis" via bit.ly/4lx80GU Philip Dunne Trevor Graham Kit Curtius #UC #LGD