Zaka Yuen
@zakayuen21
Postdoc working on nanopore sequencing and bioinformatics at @JCSMR | From Hong Kong | All views on my own
ID: 1224488804574093312
04-02-2020 00:24:54
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Our review article on sequencing & characterising short tandem repeats (STRs) is out in Nature Reviews Genetics! We delve into short read & long read STR genotyping tools and applications in rare disease & population genetics🧬 go.nature.com/48pWZix Genomic Technologies Group Dr Harriet Dashnow Daniel MacArthur
We have released some raw Oxford Nanopore data for benchmarking purposes, along with some basecalled outputs. We use the subset of 20k or 500k for benchmarking tools and methods a LOT! We thought they would be helpful to others too. 4/5kHz R10.4.1 & RNA004 gentechgp.github.io/gtgseq/
The improvement in Oxford Nanopore modified base models over the past 18 months #NanoporeConf
At Oxford Nanopore we have successfully sequenced a yeast chromosome, telomere to telomere, in one read.
RISER has been updated to support Oxford Nanopore RNA004 adaptive sampling to enrich or deplete RNA classes such as mRNA, mtRNA and globin mRNA: github.com/comprna/riser
Beginner or Advanced R User? 🤔 ➡️ This cheat sheet is gold. It summarizes all the best practices R developers should apply. If some of it isn’t familiar, the first module of my productive-r-workflow.com project explains exactly this! Thanks so much Jacob Scott 🙏 What's missing?