Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦

@boris_ctcf

Verifiable facts and personal notes related to paralogous CTCF and CTCF Like BORIS factors which share 11 multivalent DNA-binding fingers but differ otherwise

ID: 272939591

linkhttps://www.researchgate.net/profile/Victor_Lobanenkov calendar_today27-03-2011 13:52:42

18,18K Tweet

2,2K Followers

4,4K Following

Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

Tumor-associated zinc finger CTCF mutations which selectively alter its DNA-binding specificity have been reported for the first time by Galina Filippova et. al. almost 25 years ago: pubmed.ncbi.nlm.nih.gov/11782357/

Tumor-associated zinc finger CTCF mutations which selectively alter its DNA-binding specificity have been reported for the first time by Galina Filippova et. al. almost 25 years ago:
pubmed.ncbi.nlm.nih.gov/11782357/
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter its DNA-binding specificity. Filippova et al Cancer Res Jan 1; 62(1): 48-52 (2002). pubmed.ncbi.nlm.nih.gov/11782357/

Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter its DNA-binding specificity.
Filippova et al Cancer Res Jan 1; 62(1): 48-52 (2002). pubmed.ncbi.nlm.nih.gov/11782357/
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites Genome Biol. 2024 Jan 31; 25(1): 40. pubmed.ncbi.nlm.nih.gov/38297316/ genomebiology.biomedcentral.com/articles/10.11…

BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites
Genome Biol. 2024 Jan 31; 25(1): 40.
pubmed.ncbi.nlm.nih.gov/38297316/ 
genomebiology.biomedcentral.com/articles/10.11…
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

Familial cases of point mutations in the XIST promoter which revealed strict correlation between CTCF binding and preemptive choices of X chromosome inactivation have already provided near direct evidence for the crucial CTCF role in Human X-inactivation pubmed.ncbi.nlm.nih.gov/15731119/

Familial cases of point mutations in the XIST promoter which revealed strict correlation between CTCF binding and preemptive choices of X chromosome inactivation have already provided near direct evidence for the crucial CTCF role in Human X-inactivation

pubmed.ncbi.nlm.nih.gov/15731119/
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma PNAS U S A. 2002 May 14; 99(10): 6806-11 pnas.org/doi/10.1073/pn…

BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma
PNAS U S A. 2002 May 14; 99(10): 6806-11
pnas.org/doi/10.1073/pn…
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

Post-fertilization initiation of anti-sense transcript in ancestral LTR retrotransposon drives lineage-specific genomic imprinting of ZDBF2 in rabbits and macaques eLIFE publication (June 2, 2025) by Hisato Kobayashi, corresponding author and 22 coauthors doi.org/10.7554/eLife.…

Post-fertilization initiation of anti-sense transcript in ancestral LTR retrotransposon drives lineage-specific genomic imprinting of ZDBF2 in rabbits and macaques

eLIFE publication (June 2, 2025) by Hisato Kobayashi, corresponding author and 22 coauthors doi.org/10.7554/eLife.…
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

CTCF-binding silencer in the WT1 anti-sense regulatory region (WT1 ARR) regulates imprinting of AWT1 and WT1-AS genes, and exhibits sequential epigenetic defects during Wilms’ tumor genesis Hum Mol Genet 2007 paper by Anne Hancock and coauthors from V. Lobanenkov & K. Malik labs

CTCF-binding silencer in the WT1 anti-sense regulatory region (WT1 ARR) regulates imprinting of AWT1 and WT1-AS genes, and exhibits sequential epigenetic defects during Wilms’ tumor genesis

Hum Mol Genet 2007 paper by Anne Hancock and coauthors from V. Lobanenkov & K. Malik labs
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

Deciphering the role of RNA in regulating DNA binding CTCF affinity in chromatin Genome Biology paper (May 12, 2025) published by Judith Hyle et al. doi.org/10.1186/s13059…

Deciphering the role of RNA in regulating DNA binding CTCF affinity in chromatin

Genome Biology paper (May 12, 2025) published by Judith Hyle et al. doi.org/10.1186/s13059…
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

CTCF maintains pericentromere function and mitotic fidelity Preprint posted on bioRxiv (June 3, 2025) by Erin Walsh and Andrew Daniel Stephens doi.org/10.1101/2025.0…

CTCF maintains pericentromere function and mitotic fidelity

Preprint posted on bioRxiv (June 3, 2025) by Erin Walsh and Andrew Daniel Stephens doi.org/10.1101/2025.0…
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

CTCF binding landscape is shaped by the epigenetic state of the N-terminal nucleosome in relation to CTCF motif orientation M. Tajmul, D. N. Bhatt, L. Ruje, E. Price, Y. Ji, D. Loukinov, V. B. Teif, V. V. Lobanenkov, E. M. Pugacheva revised May 23, 2025 biorxiv.org/content/10.110…

CTCF binding landscape is shaped by the epigenetic state of the N-terminal nucleosome in relation to CTCF motif orientation

M. Tajmul, D. N. Bhatt, L. Ruje, E. Price, Y. Ji, D. Loukinov, V. B. Teif, V. V. Lobanenkov, E. M. Pugacheva

revised May 23, 2025
biorxiv.org/content/10.110…
Victor V. Lobanenkov πŸ‡ΊπŸ‡¦ (@boris_ctcf) 's Twitter Profile Photo

DeepMind’s new AlphaGenome AI takes long (1MB) stretches of DNA to predict various properties such as the expression levels of the genes they contain, how those levels could be affected by mutations, and even 3D DNA loops of enhancer-promoter links, etc. deepmind.google/discover/blog/…